A0A6J0ZH87 · A0A6J0ZH87_9ROSI
- ProteinSmall nuclear ribonucleoprotein Sm D1
- GeneLOC110409279
- StatusUniProtKB unreviewed (TrEMBL)
- Organism
- Amino acids114 (go to sequence)
- Protein existenceInferred from homology
- Annotation score3/5
Function
function
Involved in splicing regulation. Facilitates post-transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs.
GO annotations
all annotations | all molecular function | nucleotide binding | molecular_function | nucleic acid binding | dna binding | chromatin binding | dna-binding transcription factor activity | rna binding | cytoskeletal motor activity | catalytic activity | nuclease activity | signaling receptor binding | structural molecule activity | transporter activity | binding | protein binding | translation factor activity, rna binding | lipid binding | kinase activity | transferase activity | hydrolase activity | oxygen binding | enzyme regulator activity | carbohydrate binding | signaling receptor activity | translation regulator activity | transcription regulator activity | other molecular function | all biological process | carbohydrate metabolic process | generation of precursor metabolites and energy | nucleobase-containing compound metabolic process | dna metabolic process | translation | lipid metabolic process | transport | response to stress | cell cycle | cell communication | signal transduction | cell-cell signaling | multicellular organism development | circadian rhythm | biological_process | metabolic process | catabolic process | biosynthetic process | response to light stimulus | response to external stimulus | tropism | response to biotic stimulus | response to abiotic stimulus | response to endogenous stimulus | embryo development | post-embryonic development | fruit ripening | abscission | pollination | flower development | cellular process | programmed cell death | photosynthesis | cellular component organization | cell growth | protein metabolic process | cellular homeostasis | secondary metabolic process | reproductive process | cell differentiation | protein modification process | growth | epigenetic regulation of gene expression | response to chemical | anatomical structure development | regulation of molecular function | other biological process | all cellular component | cellular_component | extracellular region | cell wall | intracellular anatomical structure | nucleus | nuclear envelope | nucleoplasm | nucleolus | cytoplasm | mitochondrion | lysosome | endosome | vacuole | peroxisome | endoplasmic reticulum | golgi apparatus | cytosol | ribosome | cytoskeleton | plasma membrane | chloroplast | plastid | thylakoid | membrane | external encapsulating structure | other cellular component | |||
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Aspect | Term | |
---|---|---|
Cellular Component | catalytic step 2 spliceosome | |
Cellular Component | commitment complex | |
Cellular Component | pICln-Sm protein complex | |
Cellular Component | precatalytic spliceosome | |
Cellular Component | SMN-Sm protein complex | |
Cellular Component | spliceosomal tri-snRNP complex | |
Cellular Component | U1 snRNP | |
Cellular Component | U12-type spliceosomal complex | |
Cellular Component | U2 snRNP | |
Cellular Component | U4 snRNP | |
Cellular Component | U5 snRNP | |
Molecular Function | RNA binding | |
Biological Process | spliceosomal snRNP assembly |
Keywords
- Molecular function
- Biological process
Names & Taxonomy
Protein names
- Recommended nameSmall nuclear ribonucleoprotein Sm D1
- Alternative names
Gene names
Organism names
- Organism
- Taxonomic lineageEukaryota > Viridiplantae > Streptophyta > Embryophyta > Tracheophyta > Spermatophyta > Magnoliopsida > eudicotyledons > Gunneridae > Pentapetalae > rosids > malvids > Malvales > Malvaceae > Byttnerioideae > Herrania
Accessions
- Primary accessionA0A6J0ZH87
Proteomes
Subcellular Location
Structure
Family & Domains
Features
Showing features for domain, region, compositional bias.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Domain | 2-74 | Sm | ||||
Sequence: KLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSL | ||||||
Region | 84-114 | Disordered | ||||
Sequence: TPRVKPKKPAAGRPSVRGRGRGRGRGRGRGR | ||||||
Compositional bias | 93-114 | Basic residues | ||||
Sequence: AAGRPSVRGRGRGRGRGRGRGR |
Sequence similarities
Belongs to the snRNP core protein family.
Phylogenomic databases
Family and domain databases
Sequence
- Sequence statusComplete
- Length114
- Mass (Da)12,652
- Last updated2020-10-07 v1
- Checksum4F023654522BBD2C
Features
Showing features for compositional bias.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Compositional bias | 93-114 | Basic residues | ||||
Sequence: AAGRPSVRGRGRGRGRGRGRGR |
Keywords
- Technical term