A0A6H1XEC6 · A0A6H1XEC6_9ROSA

  • Protein
    DNA-directed RNA polymerase subunit beta'
  • Gene
    rpoC1
  • Status
    UniProtKB unreviewed (TrEMBL)
  • Amino acids
  • Protein existence
    Inferred from homology
  • Annotation score
    3/5

Function

function

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.

Catalytic activity

Cofactor

Protein has several cofactor binding sites:
Mg2+ (UniProtKB | Rhea| CHEBI:18420 )

Note: Binds 1 Mg2+ ion per subunit.
Zn2+ (UniProtKB | Rhea| CHEBI:29105 )

Note: Binds 1 Zn2+ ion per subunit.

Features

Showing features for binding site.

TypeIDPosition(s)Description
Binding site69Zn2+ (UniProtKB | ChEBI)
Binding site71Zn2+ (UniProtKB | ChEBI)
Binding site87Zn2+ (UniProtKB | ChEBI)
Binding site90Zn2+ (UniProtKB | ChEBI)
Binding site490Mg2+ (UniProtKB | ChEBI)
Binding site492Mg2+ (UniProtKB | ChEBI)
Binding site494Mg2+ (UniProtKB | ChEBI)

GO annotations

AspectTerm
Cellular Componentchloroplast
Cellular ComponentDNA-directed RNA polymerase complex
Molecular FunctionDNA binding
Molecular FunctionDNA-directed 5'-3' RNA polymerase activity
Molecular Functionmagnesium ion binding
Molecular Functionzinc ion binding
Biological ProcessDNA-templated transcription

Keywords

Enzyme and pathway databases

Names & Taxonomy

Protein names

  • Recommended name
    DNA-directed RNA polymerase subunit beta'
  • EC number
  • Alternative names
    • PEP
    • Plastid-encoded RNA polymerase subunit beta'
      (RNA polymerase subunit beta'
      )

Gene names

    • Name
      rpoC1

Encoded on

  • Chloroplast

Organism names

  • Taxonomic identifier
  • Organism
  • Taxonomic lineage
    Eukaryota > Viridiplantae > Streptophyta > Embryophyta > Tracheophyta > Spermatophyta > Magnoliopsida > eudicotyledons > Gunneridae > Pentapetalae > rosids > fabids > Rosales > Rosaceae > Amygdaloideae > Amygdaleae > Prunus

Accessions

  • Primary accession
    A0A6H1XEC6

Subcellular Location

Keywords

Interaction

Subunit

In plastids the minimal PEP RNA polymerase catalytic core is composed of four subunits: alpha, beta, beta', and beta''. When a (nuclear-encoded) sigma factor is associated with the core the holoenzyme is formed, which can initiate transcription.

Family & Domains

Features

Showing features for domain.

TypeIDPosition(s)Description
Domain263-544RNA polymerase N-terminal

Sequence similarities

Belongs to the RNA polymerase beta' chain family. RpoC1 subfamily.

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Length
    683
  • Mass (Da)
    78,831
  • Last updated
    2020-08-12 v1
  • Checksum
    192CE8694D665EDB
MIDQYKHQQLRIGLVSPQQISAWAQKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDEKKDPRFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDVFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHFASNIGVAKSKIREKEPVVWEILHEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGHAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQNKRIDDNNYKYTKEKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVITSRETPIEVHYESLGTYHEIYGHYLIVRSIKKEIICIYVRTTVGHISLYREIEEAIQGFCRAYSYGT

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
MH700952
EMBL· GenBank· DDBJ
QJA13973.1
EMBL· GenBank· DDBJ
Genomic DNA
MW406457
EMBL· GenBank· DDBJ
QWK45284.1
EMBL· GenBank· DDBJ
Genomic DNA
MW406458
EMBL· GenBank· DDBJ
QWK45369.1
EMBL· GenBank· DDBJ
Genomic DNA
MW406459
EMBL· GenBank· DDBJ
QWK45454.1
EMBL· GenBank· DDBJ
Genomic DNA
MW406460
EMBL· GenBank· DDBJ
QWK45539.1
EMBL· GenBank· DDBJ
Genomic DNA
MW406461
EMBL· GenBank· DDBJ
QWK45624.1
EMBL· GenBank· DDBJ
Genomic DNA
MW406462
EMBL· GenBank· DDBJ
QWK45709.1
EMBL· GenBank· DDBJ
Genomic DNA
MW406465
EMBL· GenBank· DDBJ
QWK45964.1
EMBL· GenBank· DDBJ
Genomic DNA
MW406466
EMBL· GenBank· DDBJ
QWK46049.1
EMBL· GenBank· DDBJ
Genomic DNA
MW406467
EMBL· GenBank· DDBJ
QWK46134.1
EMBL· GenBank· DDBJ
Genomic DNA
MW406468
EMBL· GenBank· DDBJ
QWK46219.1
EMBL· GenBank· DDBJ
Genomic DNA
MW406469
EMBL· GenBank· DDBJ
QWK46304.1
EMBL· GenBank· DDBJ
Genomic DNA
MW406472
EMBL· GenBank· DDBJ
QWK46559.1
EMBL· GenBank· DDBJ
Genomic DNA

Similar Proteins

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