A0A6B8VKQ8 · A0A6B8VKQ8_9CORY
- ProteinRiboflavin biosynthesis protein RibBA
- GeneribBA
- StatusUniProtKB unreviewed (TrEMBL)
- Organism
- Amino acids425 (go to sequence)
- Protein existenceInferred from homology
- Annotation score4/5
Function
function
Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate.
Catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate.
Catalytic activity
- D-ribulose 5-phosphate = (2S)-2-hydroxy-3-oxobutyl phosphate + formate + H+
Cofactor
Protein has several cofactor binding sites:
Mn2+ (UniProtKB | Rhea| CHEBI:29035 )
Note: Binds 2 divalent metal cations per subunit. Magnesium or manganese.
Note: Binds 1 zinc ion per subunit.
Pathway
Cofactor biosynthesis; riboflavin biosynthesis; 2-hydroxy-3-oxobutyl phosphate from D-ribulose 5-phosphate: step 1/1.
Cofactor biosynthesis; riboflavin biosynthesis; 5-amino-6-(D-ribitylamino)uracil from GTP: step 1/4.
Features
Showing features for binding site, site, active site.
Type | ID | Position(s) | Description | ||
---|---|---|---|---|---|
Binding site | 38-39 | D-ribulose 5-phosphate (UniProtKB | ChEBI) | |||
Binding site | 39 | Mg2+ 1 (UniProtKB | ChEBI) | |||
Binding site | 39 | Mg2+ 2 (UniProtKB | ChEBI) | |||
Binding site | 43 | D-ribulose 5-phosphate (UniProtKB | ChEBI) | |||
Site | 136 | Essential for DHBP synthase activity | |||
Binding site | 150-154 | D-ribulose 5-phosphate (UniProtKB | ChEBI) | |||
Binding site | 153 | Mg2+ 2 (UniProtKB | ChEBI) | |||
Binding site | 174 | D-ribulose 5-phosphate (UniProtKB | ChEBI) | |||
Site | 174 | Essential for DHBP synthase activity | |||
Binding site | 264-268 | GTP (UniProtKB | ChEBI) | |||
Binding site | 269 | Zn2+ (UniProtKB | ChEBI); catalytic | |||
Binding site | 280 | Zn2+ (UniProtKB | ChEBI); catalytic | |||
Binding site | 282 | Zn2+ (UniProtKB | ChEBI); catalytic | |||
Binding site | 285 | GTP (UniProtKB | ChEBI) | |||
Binding site | 308-310 | GTP (UniProtKB | ChEBI) | |||
Binding site | 330 | GTP (UniProtKB | ChEBI) | |||
Active site | 342 | Proton acceptor; for GTP cyclohydrolase activity | |||
Active site | 344 | Nucleophile; for GTP cyclohydrolase activity | |||
Binding site | 365 | GTP (UniProtKB | ChEBI) | |||
Binding site | 370 | GTP (UniProtKB | ChEBI) | |||
GO annotations
Aspect | Term | |
---|---|---|
Cellular Component | cytosol | |
Molecular Function | 3,4-dihydroxy-2-butanone-4-phosphate synthase activity | |
Molecular Function | GTP binding | |
Molecular Function | GTP cyclohydrolase II activity | |
Molecular Function | magnesium ion binding | |
Molecular Function | manganese ion binding | |
Molecular Function | zinc ion binding | |
Biological Process | riboflavin biosynthetic process |
Keywords
- Molecular function
- Biological process
- Ligand
Enzyme and pathway databases
Names & Taxonomy
Protein names
- Recommended nameRiboflavin biosynthesis protein RibBA
Including 2 domains:
- Recommended name3,4-dihydroxy-2-butanone 4-phosphate synthase
- EC number
- Short namesDHBP synthase
- Recommended nameGTP cyclohydrolase-2
- EC number
- Alternative names
Gene names
Organism names
- Organism
- Strain
- Taxonomic lineageBacteria > Bacillati > Actinomycetota > Actinomycetes > Mycobacteriales > Corynebacteriaceae > Corynebacterium
Accessions
- Primary accessionA0A6B8VKQ8
Proteomes
Subcellular Location
UniProt Annotation
GO Annotation
Structure
Family & Domains
Features
Showing features for region, domain.
Type | ID | Position(s) | Description | ||
---|---|---|---|---|---|
Region | 1-213 | DHBP synthase | |||
Region | 214-425 | GTP cyclohydrolase II | |||
Domain | 220-385 | GTP cyclohydrolase II | |||
Sequence similarities
In the C-terminal section; belongs to the GTP cyclohydrolase II family.
In the N-terminal section; belongs to the DHBP synthase family.
Family and domain databases
Sequence
- Sequence statusComplete
- Length425
- Mass (Da)46,286
- Last updated2020-06-17 v1
- MD5 ChecksumCBC50F273BE5483051733AC216917980
Sequence databases
Nucleotide Sequence | Protein Sequence | Molecule Type | Status | |
---|---|---|---|---|
CP046453 EMBL· GenBank· DDBJ | QGU04673.1 EMBL· GenBank· DDBJ | Genomic DNA |