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A0A650FHJ1 · A0A650FHJ1_9SPER

  • Protein
    DNA-directed RNA polymerase subunit beta'
  • Gene
    rpoC1
  • Status
    UniProtKB unreviewed (TrEMBL)
  • Amino acids
  • Protein existence
    Inferred from homology
  • Annotation score
    3/5

Function

function

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.

Catalytic activity

Cofactor

Protein has several cofactor binding sites:
Mg2+ (UniProtKB | Rhea| CHEBI:18420 )

Note: Binds 1 Mg2+ ion per subunit.
Zn2+ (UniProtKB | Rhea| CHEBI:29105 )

Note: Binds 1 Zn2+ ion per subunit.

Features

Showing features for binding site.

TypeIDPosition(s)Description
Binding site69Zn2+ (UniProtKB | ChEBI)
Binding site71Zn2+ (UniProtKB | ChEBI)
Binding site89Zn2+ (UniProtKB | ChEBI)
Binding site92Zn2+ (UniProtKB | ChEBI)
Binding site516Mg2+ (UniProtKB | ChEBI)
Binding site518Mg2+ (UniProtKB | ChEBI)
Binding site520Mg2+ (UniProtKB | ChEBI)

GO annotations

AspectTerm
Cellular Componentchloroplast
Cellular ComponentDNA-directed RNA polymerase complex
Molecular FunctionDNA binding
Molecular FunctionDNA-directed 5'-3' RNA polymerase activity
Molecular Functionmagnesium ion binding
Molecular Functionzinc ion binding
Biological ProcessDNA-templated transcription

Keywords

Enzyme and pathway databases

Names & Taxonomy

Protein names

  • Recommended name
    DNA-directed RNA polymerase subunit beta'
  • EC number
  • Alternative names
    • PEP
    • Plastid-encoded RNA polymerase subunit beta'
      (RNA polymerase subunit beta'
      )

Gene names

    • Name
      rpoC1
    • ORF names
      Tonu_Cp016

Encoded on

  • Chloroplast

Organism names

  • Taxonomic identifier
  • Organism
  • Taxonomic lineage
    Eukaryota > Viridiplantae > Streptophyta > Embryophyta > Tracheophyta > Spermatophyta > Pinopsida > Pinidae > Conifers II > Cupressales > Taxaceae > Torreya

Accessions

  • Primary accession
    A0A650FHJ1

Subcellular Location

Keywords

Interaction

Subunit

In plastids the minimal PEP RNA polymerase catalytic core is composed of four subunits: alpha, beta, beta', and beta''. When a (nuclear-encoded) sigma factor is associated with the core the holoenzyme is formed, which can initiate transcription.

Family & Domains

Features

Showing features for domain.

TypeIDPosition(s)Description
Domain288-570RNA polymerase N-terminal

Sequence similarities

Belongs to the RNA polymerase beta' chain family. RpoC1 subfamily.

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Length
    705
  • Mass (Da)
    82,180
  • Last updated
    2020-04-22 v1
  • MD5 Checksum
    5AE5342C0D2D1B18054E18E9A3534F2C
MSDQDKHQQLRIGLVSPEQILAWSERILPNGERVGEVTTDYTLDYKTYEPERDGLFCEKIFGPKKRGVCACGKSRVIENEKEDHKSNFCAQCGVELVVDSRIRRYQMGYIKLACPVVHIWYFKRRPSYIADLLDKTRKELEDPVYCDVYITRSMANKPTLLRFQGSLKYEHQSWPEIIAYYLSWDFGLFQEREIATGGKAIRDQLAGLDLQIILDRSYMEWKRLDEIISILFTGTTNAKKDIVFDKGLKKMYDKLNEQELQKLRRRKDLLVRRMRLAKYFIQANIEPQWMVLSLLPVLPPDLRPMFQLDEVGLISSDLNELYQTVIRRNNLLIHLRKNTNVFVMPDLLTDQKRLVQEAVDALLDNGIGGQPVRDSHDRPYKSLSDFIQGKEGRFRENLLGKRVDYSGRSVIVVGPLLSLYQCGLPREIAVELFQAFLIRDLIERQIAPNLRAAKSIIRDRGPIIWNVLKQIMQRHPVLLNRAPTLHRLGIQAFIPILIEERAIRLHPLVCAGFNADFDGDQMAVHVPLSMEAQVEARLLMFSHLNLISPTIGYPICVPTQDMLLGLYRSTLQKNQGIYENRYHPDNSKKKIISPSFSSYDDALRAYQQKRIDLDSPLWLRWGRDIDIPIINSVNREVPIEVQYESLGTFYEIHQHFRIRKGRMGEILNKYIRTTVGRTRFNREIEEAIKGLWAYDIRQELSLFRI

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
MK249060
EMBL· GenBank· DDBJ
QGU93349.1
EMBL· GenBank· DDBJ
Genomic DNA

Similar Proteins

Disclaimer

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