A0A5N6KSW0 · A0A5N6KSW0_9ROSI

  • Protein
    RNA-directed RNA polymerase
  • Status
    UniProtKB unreviewed (TrEMBL)
  • Amino acids
  • Protein existence
    Inferred from homology
  • Annotation score
    4/5

Function

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.

Catalytic activity

Cofactor

Mn2+ (UniProtKB | Rhea| CHEBI:29035 )

GO annotations

all annotationsall molecular functionnucleotide bindingmolecular_functionnucleic acid bindingdna bindingchromatin bindingdna-binding transcription factor activityrna bindingcytoskeletal motor activitycatalytic activitynuclease activitysignaling receptor bindingstructural molecule activitytransporter activitybindingprotein bindingtranslation factor activity, rna bindinglipid bindingkinase activitytransferase activityhydrolase activityoxygen bindingenzyme regulator activitycarbohydrate bindingsignaling receptor activitytranslation regulator activitytranscription regulator activityother molecular functionall biological processcarbohydrate metabolic processgeneration of precursor metabolites and energynucleobase-containing compound metabolic processdna metabolic processtranslationlipid metabolic processtransportresponse to stresscell cyclecell communicationsignal transductioncell-cell signalingmulticellular organism developmentcircadian rhythmbiological_processmetabolic processcatabolic processbiosynthetic processresponse to light stimulusresponse to external stimulustropismresponse to biotic stimulusresponse to abiotic stimulusresponse to endogenous stimulusembryo developmentpost-embryonic developmentfruit ripeningabscissionpollinationflower developmentcellular processprogrammed cell deathphotosynthesiscellular component organizationcell growthprotein metabolic processcellular homeostasissecondary metabolic processreproductive processcell differentiationprotein modification processgrowthepigenetic regulation of gene expressionresponse to chemicalanatomical structure developmentregulation of molecular functionother biological processall cellular componentcellular_componentextracellular regioncell wallintracellular anatomical structurenucleusnuclear envelopenucleoplasmnucleoluscytoplasmmitochondrionlysosomeendosomevacuoleperoxisomeendoplasmic reticulumgolgi apparatuscytosolribosomecytoskeletonplasma membranechloroplastplastidthylakoidmembraneexternal encapsulating structureother cellular component
Cell color indicative of number of GO terms
AspectTerm
Cellular Componentmembrane
Cellular ComponentMre11 complex
Cellular Componentsite of double-strand break
Molecular Function3'-5'-DNA exonuclease activity
Molecular Functionmanganese ion binding
Molecular FunctionRNA binding
Molecular FunctionRNA-dependent RNA polymerase activity
Molecular Functionsingle-stranded DNA endodeoxyribonuclease activity
Biological Processdouble-strand break repair via homologous recombination
Biological Processdouble-strand break repair via nonhomologous end joining
Biological Processmeiotic DNA double-strand break formation
Biological Processmitochondrial double-strand break repair via homologous recombination
Biological Processmitotic G2 DNA damage checkpoint signaling
Biological Processmitotic intra-S DNA damage checkpoint signaling
Biological Processregulatory ncRNA-mediated gene silencing
Biological Processtelomere maintenance

Keywords

Enzyme and pathway databases

Names & Taxonomy

Protein names

  • Recommended name
    RNA-directed RNA polymerase
  • EC number

Gene names

    • ORF names
      FH972_022424

Organism names

  • Taxonomic identifier
  • Organism
  • Strain
    • Cfa_2016G
  • Taxonomic lineage
    Eukaryota > Viridiplantae > Streptophyta > Embryophyta > Tracheophyta > Spermatophyta > Magnoliopsida > eudicotyledons > Gunneridae > Pentapetalae > rosids > fabids > Fagales > Betulaceae > Carpinus

Accessions

  • Primary accession
    A0A5N6KSW0

Proteomes

Subcellular Location

Features

Showing features for transmembrane.

TypeIDPosition(s)Description
Transmembrane156-180Helical

Keywords

Family & Domains

Features

Showing features for domain, region, compositional bias.

TypeIDPosition(s)Description
Domain1072-1249Mre11 DNA-binding
Region1306-1497Disordered
Compositional bias1360-1377Polar residues
Compositional bias1398-1420Acidic residues
Compositional bias1423-1478Polar residues
Region1744-1763Disordered
Region1777-1800Disordered
Region2103-2164Disordered
Compositional bias2143-2161Polar residues
Compositional bias2201-2233Polar residues
Region2201-2242Disordered
Region2450-2502Disordered
Compositional bias2480-2502Polar residues
Region2523-2561Disordered
Compositional bias2541-2561Polar residues
Region2603-2640Disordered
Compositional bias2616-2640Polar residues
Region2657-2685Disordered
Compositional bias2662-2680Polar residues

Sequence similarities

Belongs to the MRE11/RAD32 family.
Belongs to the RdRP family.

Keywords

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Length
    4,089
  • Mass (Da)
    452,597
  • Last updated
    2020-02-26 v1
  • Checksum
    1B819237F1685188

Features

Showing features for compositional bias.

TypeIDPosition(s)Description
Compositional bias1360-1377Polar residues
Compositional bias1398-1420Acidic residues
Compositional bias1423-1478Polar residues
Compositional bias2143-2161Polar residues
Compositional bias2201-2233Polar residues
Compositional bias2480-2502Polar residues
Compositional bias2541-2561Polar residues
Compositional bias2616-2640Polar residues
Compositional bias2662-2680Polar residues

Keywords

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
VIBQ01000012
EMBL· GenBank· DDBJ
KAB8342826.1
EMBL· GenBank· DDBJ
Genomic DNA

Similar Proteins

Disclaimer

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