A0A5M9Z0S6 · A0A5M9Z0S6_9LACO

Function

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.

Cofactor

Protein has several cofactor binding sites:
Mg2+ (UniProtKB | Rhea| CHEBI:18420 )

Mn2+ (UniProtKB | Rhea| CHEBI:29035 )

Note: Probably binds two magnesium or manganese ions per subunit.
Mn2+ (UniProtKB | Rhea| CHEBI:29035 )

Features

Showing features for binding site, active site, site.

127520406080100120140160180200220240260
Type
IDPosition(s)Description
Binding site7Mg2+ 1 (UniProtKB | ChEBI)
Binding site44Mg2+ 1 (UniProtKB | ChEBI)
Active site128
Active site167Proton donor/acceptor
Binding site167Mg2+ 1 (UniProtKB | ChEBI)
Binding site169Mg2+ 1 (UniProtKB | ChEBI)
Site169Transition state stabilizer
Site240Important for catalytic activity
Binding site265Mg2+ 1 (UniProtKB | ChEBI)
Active site266Proton acceptor
Binding site266Mg2+ 1 (UniProtKB | ChEBI)
Site266Interaction with DNA substrate

GO annotations

AspectTerm
Molecular FunctionDNA binding
Molecular FunctionDNA-(apurinic or apyrimidinic site) endonuclease activity
Molecular Functiondouble-stranded DNA 3'-5' DNA exonuclease activity
Molecular Functionendonuclease activity
Molecular Functionmetal ion binding
Molecular Functionphosphoric diester hydrolase activity
Biological Processbase-excision repair

Keywords

Names & Taxonomy

Protein names

  • Submitted names
    • Exodeoxyribonuclease III
      (EC:3.1.11.2
      )

Gene names

    • Name
      xth
    • ORF names
      F1C09_06920

Organism names

  • Taxonomic identifier
  • Organism
  • Strain
    • NCK2488
  • Taxonomic lineage
    Bacteria > Bacillota > Bacilli > Lactobacillales > Lactobacillaceae > Lactobacillus

Accessions

  • Primary accession
    A0A5M9Z0S6

Proteomes

Family & Domains

Features

Showing features for domain.

TypeIDPosition(s)Description
Domain4-253Endonuclease/exonuclease/phosphatase

Sequence similarities

Belongs to the DNA repair enzymes AP/ExoA family.

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Length
    275
  • Mass (Da)
    31,323
  • Last updated
    2020-02-26 v1
  • MD5 Checksum
    7733942C68D4799F5D2792252AE52A87
MILISWNIDSLNAALTGTSARAEETQQVLTKIHDANPDIIAIQETKLRATGPTKKHKEVLAEKFPEYDYVWRSSEEPARKGYAGTMYLYKKGLTPAVSEPIIGAPEPMDHEGRIITLEFDKCFVTQVYTPNSGSGLKRLAERQVWDQKYIEYLQKLDEKKPVLASGDYNCAHTEIDLKHPENNHHSAGFTDEERVDFTNLLNAGFTDTFRKVHGEITGVYSWWAQRVRTAKANNSGWRIDYWLVSNRIADKVVRSEMIDTGKRADHCPILLEINL

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
VUAV01000037
EMBL· GenBank· DDBJ
KAA8812310.1
EMBL· GenBank· DDBJ
Genomic DNA

Similar Proteins

Disclaimer

Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. Our staff consists of biologists and biochemists that are not trained to give medical advice.
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