A0A5A7PDJ2 · A0A5A7PDJ2_STRAF

Function

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.

Features

Showing features for binding site.

162550100150200250300350400450500550600
TypeIDPosition(s)Description
Binding site487Zn2+ (UniProtKB | ChEBI)
Binding site490Zn2+ (UniProtKB | ChEBI)
Binding site502Zn2+ (UniProtKB | ChEBI)
Binding site505Zn2+ (UniProtKB | ChEBI)

GO annotations

all annotationsall molecular functionnucleotide bindingmolecular_functionnucleic acid bindingdna bindingchromatin bindingdna-binding transcription factor activityrna bindingcytoskeletal motor activitycatalytic activitynuclease activitysignaling receptor bindingstructural molecule activitytransporter activitybindingprotein bindingtranslation factor activity, rna bindinglipid bindingkinase activitytransferase activityhydrolase activityoxygen bindingenzyme regulator activitycarbohydrate bindingsignaling receptor activitytranslation regulator activitytranscription regulator activityother molecular functionall biological processcarbohydrate metabolic processgeneration of precursor metabolites and energynucleobase-containing compound metabolic processdna metabolic processtranslationlipid metabolic processtransportresponse to stresscell cyclecell communicationsignal transductioncell-cell signalingmulticellular organism developmentcircadian rhythmbiological_processmetabolic processcatabolic processbiosynthetic processresponse to light stimulusresponse to external stimulustropismresponse to biotic stimulusresponse to abiotic stimulusresponse to endogenous stimulusembryo developmentpost-embryonic developmentfruit ripeningabscissionpollinationflower developmentcellular processprogrammed cell deathphotosynthesiscellular component organizationcell growthprotein metabolic processcellular homeostasissecondary metabolic processreproductive processcell differentiationprotein modification processgrowthepigenetic regulation of gene expressionresponse to chemicalanatomical structure developmentregulation of molecular functionother biological processall cellular componentcellular_componentextracellular regioncell wallintracellular anatomical structurenucleusnuclear envelopenucleoplasmnucleoluscytoplasmmitochondrionlysosomeendosomevacuoleperoxisomeendoplasmic reticulumgolgi apparatuscytosolribosomecytoskeletonplasma membranechloroplastplastidthylakoidmembraneexternal encapsulating structureother cellular component
Cell color indicative of number of GO terms
AspectTerm
Cellular Componentnucleus
Cellular Componentpreribosome, small subunit precursor
Molecular Functionmetal ion binding
Molecular FunctionRNA endonuclease activity
Biological Processmaturation of SSU-rRNA

Keywords

Names & Taxonomy

Protein names

  • Submitted names
    • RNA-binding protein nob1

Gene names

    • ORF names
      STAS_06518

Organism names

  • Taxonomic identifier
  • Strain
    • cv. UVA1
  • Taxonomic lineage
    Eukaryota > Viridiplantae > Streptophyta > Embryophyta > Tracheophyta > Spermatophyta > Magnoliopsida > eudicotyledons > Gunneridae > Pentapetalae > asterids > lamiids > Lamiales > Orobanchaceae > Buchnereae > Striga

Accessions

  • Primary accession
    A0A5A7PDJ2

Proteomes

Subcellular Location

Keywords

  • Cellular component

Family & Domains

Features

Showing features for region, domain, compositional bias.

Type
IDPosition(s)Description
Region1-40Disordered
Domain58-144Ribonuclease PIN
Region215-257Disordered
Compositional bias231-246Basic and acidic residues
Compositional bias380-389Basic and acidic residues
Region380-400Disordered
Domain477-547Nin one binding (NOB1) Zn-ribbon-like

Sequence similarities

Belongs to the NOB1 family.

Phylogenomic databases

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Length
    625
  • Mass (Da)
    69,313
  • Last updated
    2019-11-13 v1
  • MD5 Checksum
    B927D4FDDA8BC1035A2D62B5C4666848
MEVQVPSAAPPCWSSVLKKQPERQEQQPQPQHQPLPSAQRGGILVGSCKSSKGIAVAVVDANAIIQGGERLFHSADRFVSVAEVISEIRDPASRHFLSVLPFAVDTLEPSPDALKKVISFAKATGDLQTLSDVDLKLIALTYTLEAQIHGTQHLRNSPPPIHTVNVKRLPEKDLPGWGSNVPNLEEWEALEHAFENESNLNSRILPLKNLTLGVNSIDEPSPEDGSVQDGSESHHGNVEKLDDGFRKPKRYSPKKREVKIEGKKMVADGVDASQGQIDDNTDDWRPAVSRSTHRRFLRRKARREMSEALSASDDQQNTSCNVENKNLDDAQCPELLVDESYEERTNAIVQDDMIGNKKNGEINISESLKTMKLGEEHLESSEFGEKVNDAPEGTDSTGNVEGDYVEITEQELGDLEMLGQLEENDDASNVDDMSSEQSWSLRSLSESSVACVTTDFAMQNVLLQIGLRLLAPGGMQIRELHRWVLKCHACFKVTTDSGRIFCPSCGNGGTLRKVAVTVNENGIMLAARRPRVSLRGTKFSLPLPQGGRDAVTKNPILREDQLPQKYLYPKTKKKNKQGDDFFVPDDIFRHHNDKKAPFQPPVRKALAVFSGKRNPNDNHFAPPKR

Features

Showing features for compositional bias.

TypeIDPosition(s)Description
Compositional bias231-246Basic and acidic residues
Compositional bias380-389Basic and acidic residues

Keywords

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
BKCP01004361
EMBL· GenBank· DDBJ
GER30576.1
EMBL· GenBank· DDBJ
Genomic DNA

Similar Proteins

Disclaimer

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