A0A4Y6V4D3 · A0A4Y6V4D3_SACBS

Function

function

mRNA decapping enzyme that specifically removes the nicotinamide adenine dinucleotide (NAD) cap from a subset of mRNAs by hydrolyzing the diphosphate linkage to produce nicotinamide mononucleotide (NMN) and 5' monophosphate mRNA. The NAD-cap is present at the 5'-end of some mRNAs and stabilizes RNA against 5'-processing. Has preference for mRNAs with a 5'-end purine. Catalyzes the hydrolysis of a broad range of dinucleotide pyrophosphates.

Caution

Lacks conserved residue(s) required for the propagation of feature annotation.

Catalytic activity

Cofactor

Protein has several cofactor binding sites:
Mg2+ (UniProtKB | Rhea| CHEBI:18420 )

Mn2+ (UniProtKB | Rhea| CHEBI:29035 )

Note: Divalent metal cations. Mg2+ or Mn2+.
Zn2+ (UniProtKB | Rhea| CHEBI:29105 )

Note: Binds 1 zinc ion per subunit.

Features

Showing features for binding site.

TypeIDPosition(s)Description
Binding site94substrate
Binding site124Zn2+ (UniProtKB | ChEBI)
Binding site127Zn2+ (UniProtKB | ChEBI)
Binding site137substrate
Binding site142Zn2+ (UniProtKB | ChEBI)
Binding site145Zn2+ (UniProtKB | ChEBI)
Binding site150substrate
Binding site184a divalent metal cation 1 (UniProtKB | ChEBI)
Binding site200a divalent metal cation 3 (UniProtKB | ChEBI)
Binding site200a divalent metal cation 2 (UniProtKB | ChEBI)
Binding site204a divalent metal cation 1 (UniProtKB | ChEBI)
Binding site204a divalent metal cation 3 (UniProtKB | ChEBI)
Binding site218-225substrate
Binding site245a divalent metal cation 1 (UniProtKB | ChEBI)
Binding site245a divalent metal cation 3 (UniProtKB | ChEBI)
Binding site267substrate

GO annotations

AspectTerm
Cellular Componentcytosol
Molecular Functionmagnesium ion binding
Molecular Functionmanganese ion binding
Molecular FunctionNAD+ diphosphatase activity
Molecular FunctionNADH pyrophosphatase activity
Molecular FunctionRNA NAD-cap (NMN-forming) hydrolase activity
Molecular Functionzinc ion binding
Biological ProcessNAD catabolic process
Biological ProcessNADH metabolic process
Biological ProcessNADP catabolic process

Keywords

Enzyme and pathway databases

Names & Taxonomy

Protein names

  • Recommended name
    NAD-capped RNA hydrolase NudC
  • EC number
  • Short names
    DeNADding enzyme NudC
  • Alternative names
    • NADH pyrophosphatase
      (EC:3.6.1.22
      ) . EC:3.6.1.22 (UniProtKB | ENZYME | Rhea)

Gene names

    • Name
      nudC
    • ORF names
      FFV09_11865

Organism names

  • Taxonomic identifier
  • Strain
    • KCTC 43072 / ATSA2
  • Taxonomic lineage
    Bacteria > Bacillota > Bacilli > Bacillales > Paenibacillaceae > Saccharibacillus

Accessions

  • Primary accession
    A0A4Y6V4D3

Proteomes

Subcellular Location

Interaction

Subunit

Homodimer.

Family & Domains

Features

Showing features for domain, motif.

TypeIDPosition(s)Description
Domain151-275Nudix hydrolase
Motif185-206Nudix box

Sequence similarities

Belongs to the Nudix hydrolase family. NudC subfamily.

Phylogenomic databases

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Length
    283
  • Mass (Da)
    31,451
  • Last updated
    2019-09-18 v1
  • Checksum
    D44AC1524BE8A61E
MSKPSIYDRYLPALSAEPSDTPAYWFVFRSNTGQLLLSDRAGLDAVPSAQHAETLGFTPVRSLFLGLLDGAPCYAAEAPDDAEPPEGFAFHSLRPLYDRMDEDLFHVAGRALQMLNWDDTHRFCGRCAAPLAPAGHEHAKVCPQCGLRHYPRISPAVITAILKDGKILLAHSARFPNKMHGLIAGFLEAGETLEDCVRRETMEEIGLTLGKIRYFDSQPWPFPNSLMIGFVAEYESGEITVDGEEIAEANWFGPDELPNIPPRGSIARRMIDWYAEQYGSRPE

Keywords

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
CP041217
EMBL· GenBank· DDBJ
QDH23748.1
EMBL· GenBank· DDBJ
Genomic DNA

Genome annotation databases

Similar Proteins

Disclaimer

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