A0A4Y5RTX4 · A0A4Y5RTX4_9POTV

  • Protein
    Genome polyprotein
  • Status
    UniProtKB unreviewed (TrEMBL)
  • Amino acids
  • Protein existence
    Inferred from homology
  • Annotation score
    4/5

Function

function

Has helicase activity. It may be involved in replication.
Involved in aphid transmission, cell-to-cell and systemis movement, encapsidation of the viral RNA and in the regulation of viral RNA amplification.
Mediates the cap-independent, EIF4E-dependent translation of viral genomic RNAs. Binds to the cap-binding site of host EIF4E and thus interferes with the host EIF4E-dependent mRNA export and translation. VPg-RNA directly binds EIF4E and is a template for transcription. Also forms trimeric complexes with EIF4E-EIF4G, which are templates for translation.

Catalytic activity

  • Hydrolyzes a Gly-|-Gly bond at its own C-terminus, commonly in the sequence -Tyr-Xaa-Val-Gly-|-Gly, in the processing of the potyviral polyprotein.
    EC:3.4.22.45 (UniProtKB | ENZYME | Rhea)
  • Hydrolyzes glutaminyl bonds, and activity is further restricted by preferences for the amino acids in P6 - P1' that vary with the species of potyvirus, e.g. Glu-Xaa-Xaa-Tyr-Xaa-Gln-|-(Ser or Gly) for the enzyme from tobacco etch virus. The natural substrate is the viral polyprotein, but other proteins and oligopeptides containing the appropriate consensus sequence are also cleaved.
    EC:3.4.22.44 (UniProtKB | ENZYME | Rhea)

Features

Showing features for active site.

TypeIDPosition(s)Description
Active site626For helper component proteinase activity
Active site699For helper component proteinase activity

GO annotations

AspectTerm
Cellular Componenthelical viral capsid
Cellular Componenthost cell cytoplasmic vesicle
Cellular Componenthost cell nucleus
Cellular Componentmembrane
Cellular Componentvesicle
Molecular FunctionATP binding
Molecular Functioncysteine-type endopeptidase activity
Molecular Functionhelicase activity
Molecular Functionhydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
Molecular FunctionRNA binding
Molecular FunctionRNA-dependent RNA polymerase activity
Molecular Functionserine-type peptidase activity
Molecular Functionstructural molecule activity
Biological ProcessDNA-templated transcription
Biological Processproteolysis
Biological ProcessRNA-protein covalent cross-linking
Biological Processviral RNA genome replication

Keywords

Names & Taxonomy

Protein names

  • Recommended name
    Genome polyprotein

Organism names

  • Taxonomic identifier
  • Organism
  • Strain
    • HNJJ
  • Taxonomic lineage
    Viruses > Riboviria > Orthornavirae > Pisuviricota > Stelpaviricetes > Patatavirales > Potyviridae > Potyvirus > Potyvirus yituberosi

Accessions

  • Primary accession
    A0A4Y5RTX4

Subcellular Location

Features

Showing features for transmembrane.

TypeIDPosition(s)Description
Transmembrane791-816Helical
Transmembrane1006-1025Helical

Keywords

PTM/Processing

Keywords

Family & Domains

Features

Showing features for domain, region.

Type
IDPosition(s)Description
Domain141-284Peptidase S30
Domain618-740Peptidase C6
Domain1229-1381Helicase ATP-binding
Domain1400-1559Helicase C-terminal
Domain2032-2250Peptidase C4
Domain2517-2641RdRp catalytic
Region2810-2835Disordered

Sequence similarities

Belongs to the potyviridae genome polyprotein family.

Keywords

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Length
    3,061
  • Mass (Da)
    341,173
  • Last updated
    2019-09-18 v1
  • MD5 Checksum
    D3704DFE2B375B954B72A480496CFEF9
MATYMSTICFGSFECKLPYSPASCGHIVKEREVLASVDPFADLETQLSARLLKQEYATVRVLKNGTLTYRYKTDAQITRIQKKLERKDREEYHFQMAAPSIVSKITIAGGDPPSKSEPQAPRGIIHTTPRVRKVKTRPIIKLTEGQMNHLIKHVKQIMSTKGGSVQLIRKKSTYVHYKEILGTTRATVRTAHMMGLRRRVDFQCDMWTIGCLKCLARTDKWSNQVRTTQLRKGDSGVILNADSLKGNFGRNSEGLFIVRGSHEGKLYDARSKVTRSVLNSMVQFSNAENFWKGLDGNWARMRYPSDHTCIAGLPVEDCGRVAALMTHSILPCFKITCPTCAQQYANLPTSDLLKLLHKHARDGLSRLGSDGDRFVHVNKFLVTLEHLTEPVDLNLELFNEIFKSIGEKQQAPFKNLNVLNNFFLKGKENTAHEWQVAQLSLLELARFQKNRTDNIKKGDISFFRNKLSAKANWNLYLSCDNQLDKNANFLWGQREYHAKRFFSNFFEEVDPAKGYSAYEIRKHPNGTRKLSIGNLVVPLDLAEFRQKMKGDYRKQPGVSKKCTSSKDGNYVYPCCCTTPDAGSAVASTFYPPTTKHLVIGNTGDQKYVALPKGDSEMLYIAKQGYCYINVFLAMLINVSEEDAKDFTKKVRDMCVPKLGTWPTMMDLATTCAQLRIFYPDVHDAELPRILVDHDTQTCHVIASFGSQTTGYHILKASSVSQLILFANAALESAIKHYRVGGVPTACPALGSTKSPFREGGVIMSASAALKLLLKGIFTPTVMRQLLLDGPYLLILSILSPGILMAMYNTGIFALAVKLWITAKQSIAMIASLLSALALRVSAAETLVAQRIIIATAATDLLAATCDGFNLYLTYPTALMVLQVVTNTNACAATLFKAGFPSYNTSVVQIMEKNYLNLLNDAWKDLTWREKLSATWHSYRAKRSITRYIKPTGRADLKGLYNISPQAFLGRSAQVVKGTASGLSERFTTYFNTTCVSIFILFHSYNFYAFASFCHFCYLIITYYYVTQCTGNVSVNTFTSEEVYEGNRVAADTEECDCLHGMYASLQRKLERDFTWDEYIEYLQSVHPQILQFAQAQMEEYDVRHQRATPGVKNLEQVVAFMALLIMVFDAERSDCVFKTLNKFKGVLSSLDYEVRHQSLHDVLKNFDERNETIDFELREDTIRTSSVLDTKFIDWWDRQIQMGHTLPHYRTEGHFMEFTRATAVQVATAIAHTEHLDFLVRGAVGSGKSTGLPVHLTAAGSVLLIAPTRPLAENVFKQLSTEPFFKKPTLRMRGNTIFGSSPISVMTTGFALHYFANTRSQLAQFNFVIFAECHVLDPSAMAFRSLLSVYHQACKVLKVSATPVGREVAFTTQQPVKLIVEDALSFQSFVAAQGSTTTAAVIQFGSNVLVYVSSYNAVDTLATLLTDKNMVVTKVAGRTMKHGCLEIVTKGTXARPHFVVATNIIANGVTLDIDVVVDFGLKVSPFLDIANTSIAYTTVSVTYGARIQRLGRVGRFKKGVALRIGHTEKGIIAIPSMIATEAALACFAYNLPVMTGSVSATLIGNCTVRQVTTMQQFALSPFFVQNFVAHAGSMHPVIHAILTKYKLRDCMTPLCDQSIPYRASSTWLSVTEYARLGVALEIPKHVKIAFHIKEIPPTLHEMLWETVVKYKDVCLFPSIRASSISKIAYTLRTDLFAIPRTLILVERLLAEERVKQSQFRSLIDEGCSSMFSIVNLTNTLRARYAKDYTAENIQKLAKVRSQLKEFSNLDGSACAENLIKRYASLQFVHHQATTSLAKDLRLKGTWKKSLMAKDLIIAGAVAIGGIGLIYTWFTQSVATVSHQGKNTSKRIQALKFRHARAKRAGFAIANNAATIEEFFGSAYRKKGKGTGTTVGMGKSSRRFINMYGFAPTEYSFIQFVAPLTGTQIEENVYAAITDIQERFTAVRKKMVADAEIETQALNSTTTIHAYFRKDWSAKALKIALMPHTPLKVCAKTNGIAKFPAREFELRQTGPAVEVDVKDIPAQEVKHEATSLMRGLRDFNPIAQTVCTLKVSVAYGTSEMYGIGFGAYIIANHHLLRSYNGSMEVRSMHGTFRVKNLHSLSVLPITGTDIILIKMPKDFPVFPQKLHFRAPTQNARVCLVGTNFQEKYASSIITETSTTYNIPGSTFWKHWIETDHGHCGLPVVSTADGRLVGIHSLANNAQTTNYYSAFDADFASKYLRTNAHNAWVKSWVYTPDTVLWGPLKLTDSTPKGLFKTTKLVQDLIDHAVVVEQATHSAWMFEALTGNLQAVATMKSQLVTKHVVTGECRHFKEFLTVDAEAEAFFRPLMDAYGKSLLNTDAYIKDIMKYSKPIDVGIVDCAAFAEAINTVIIYLQVHGFKKCAYVTAEQEIFKALNMKAAVGAMYGGKKKDYFEHFTAADTEEIVMQSCLRLYTGLLGIWNGSLKAELRCKEKILANKTRTFTAAPLDTLLGGTVCVAAFNTQFYSKNIACCWTVGMTKFYGGWDTLLRRLPANWVYCAADGSQFVTSLTPYLINAVLAIRSTYMEDWDVGLQMLRNLYTAIIYTPISTPDGTIVTKFRGNTSGQPSTVVDNSLMVVLAMHYAFIKECIGFAEIASTCVFFVNGAALLIAVNPEKEDILDRLSQHFSDLGLNYVFSSRTRNTEELWFMSHTGLLIAGMYVPKLAEERIVSILQWDRADLAEHRLGAICAAMIESWGYSALTHQIRRFYSWLLQQQPFAAIAQEGKAPYIASMALRKLYMDTAVDAEELRAFTAMMVALDDAFACASYAVYHQANATIDAGGINKKDAKSAQGSIQPSSTKGKDKDVHAGTSGTHTVPRIKAITSKMRMPKSKGAAALHLQHLLAYAPQQIAISNTRATQSQFATWYAAVRMAYDIRETEMPTVLHGLMVWCIENGTSPNINGVWVMLDGNEQVEYPLQPIVANAKPTLTQIMAHFSDVAEAYIQMRNKKEPYMPRYGLLRNLRDVGFARYAFAFYAVTSRTPVRATEAHIQMQAAALQSAQPRLFGLDGGISTQEENTERHTTEDVSPSMHTLLGVKNM

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
MK190679
EMBL· GenBank· DDBJ
QCZ35160.1
EMBL· GenBank· DDBJ
Genomic RNA

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