A0A4R8F3L1 · A0A4R8F3L1_9BACT

  • Protein
    Carbamoyl phosphate synthase large chain
  • Gene
    carB
  • Status
    UniProtKB unreviewed (TrEMBL)
  • Amino acids
  • Protein existence
    Inferred from homology
  • Annotation score
    4/5

Function

function

Large subunit of the glutamine-dependent carbamoyl phosphate synthetase (CPSase). CPSase catalyzes the formation of carbamoyl phosphate from the ammonia moiety of glutamine, carbonate, and phosphate donated by ATP, constituting the first step of 2 biosynthetic pathways, one leading to arginine and/or urea and the other to pyrimidine nucleotides. The large subunit (synthetase) binds the substrates ammonia (free or transferred from glutamine from the small subunit), hydrogencarbonate and ATP and carries out an ATP-coupled ligase reaction, activating hydrogencarbonate by forming carboxy phosphate which reacts with ammonia to form carbamoyl phosphate.

Caution

Lacks conserved residue(s) required for the propagation of feature annotation.
The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.

Catalytic activity

Cofactor

Mg2+ (UniProtKB | Rhea| CHEBI:18420 )

Mn2+ (UniProtKB | Rhea| CHEBI:29035 )

Note: Binds 4 Mg2+ or Mn2+ ions per subunit.

Pathway

Amino-acid biosynthesis; L-arginine biosynthesis; carbamoyl phosphate from bicarbonate: step 1/1.
Pyrimidine metabolism; UMP biosynthesis via de novo pathway; (S)-dihydroorotate from bicarbonate: step 1/3.

Features

Showing features for binding site.

TypeIDPosition(s)Description
Binding site129ATP 1 (UniProtKB | ChEBI)
Binding site169ATP 1 (UniProtKB | ChEBI)
Binding site175ATP 1 (UniProtKB | ChEBI)
Binding site176ATP 1 (UniProtKB | ChEBI)
Binding site208ATP 1 (UniProtKB | ChEBI)
Binding site210ATP 1 (UniProtKB | ChEBI)
Binding site215ATP 1 (UniProtKB | ChEBI)
Binding site241ATP 1 (UniProtKB | ChEBI)
Binding site242ATP 1 (UniProtKB | ChEBI)
Binding site243ATP 1 (UniProtKB | ChEBI)
Binding site284ATP 1 (UniProtKB | ChEBI)
Binding site284Mg2+ 1 (UniProtKB | ChEBI)
Binding site284Mn2+ 1 (UniProtKB | ChEBI)
Binding site298ATP 1 (UniProtKB | ChEBI)
Binding site298Mg2+ 1 (UniProtKB | ChEBI)
Binding site298Mg2+ 2 (UniProtKB | ChEBI)
Binding site298Mn2+ 2 (UniProtKB | ChEBI)
Binding site298Mn2+ 1 (UniProtKB | ChEBI)
Binding site300Mg2+ 2 (UniProtKB | ChEBI)
Binding site300Mn2+ 2 (UniProtKB | ChEBI)
Binding site708ATP 2 (UniProtKB | ChEBI)
Binding site747ATP 2 (UniProtKB | ChEBI)
Binding site749ATP 2 (UniProtKB | ChEBI)
Binding site753ATP 2 (UniProtKB | ChEBI)
Binding site778ATP 2 (UniProtKB | ChEBI)
Binding site779ATP 2 (UniProtKB | ChEBI)
Binding site780ATP 2 (UniProtKB | ChEBI)
Binding site781ATP 2 (UniProtKB | ChEBI)
Binding site821ATP 2 (UniProtKB | ChEBI)
Binding site821Mg2+ 3 (UniProtKB | ChEBI)
Binding site821Mn2+ 3 (UniProtKB | ChEBI)
Binding site833ATP 2 (UniProtKB | ChEBI)
Binding site833Mg2+ 4 (UniProtKB | ChEBI)
Binding site833Mg2+ 3 (UniProtKB | ChEBI)
Binding site833Mn2+ 4 (UniProtKB | ChEBI)
Binding site833Mn2+ 3 (UniProtKB | ChEBI)
Binding site835Mg2+ 4 (UniProtKB | ChEBI)
Binding site835Mn2+ 4 (UniProtKB | ChEBI)

GO annotations

AspectTerm
Cellular Componentcytoplasm
Molecular FunctionATP binding
Molecular Functioncarbamoyl-phosphate synthase (ammonia) activity
Molecular Functioncarbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
Molecular Functionmetal ion binding
Biological Process'de novo' UMP biosynthetic process
Biological Processarginine biosynthetic process
Biological Processglutamine metabolic process

Keywords

Enzyme and pathway databases

Names & Taxonomy

Protein names

  • Recommended name
    Carbamoyl phosphate synthase large chain
  • EC number
  • Alternative names
    • Carbamoyl phosphate synthetase ammonia chain

Gene names

    • Name
      carB
    • ORF names
      C8D74_10291

Organism names

  • Taxonomic identifier
  • Organism
  • Strain
    • DSM 13575
  • Taxonomic lineage
    Bacteria > Thermotogota > Thermotogae > Petrotogales > Petrotogaceae > Petrotoga

Accessions

  • Primary accession
    A0A4R8F3L1

Proteomes

Subcellular Location

Interaction

Subunit

Composed of two chains; the small (or glutamine) chain promotes the hydrolysis of glutamine to ammonia, which is used by the large (or ammonia) chain to synthesize carbamoyl phosphate. Tetramer of heterodimers (alpha,beta)4.

Family & Domains

Features

Showing features for region, domain.

Type
IDPosition(s)Description
Region1-401Carboxyphosphate synthetic domain
Domain133-327ATP-grasp
Domain672-862ATP-grasp
Domain931-1073MGS-like
Region931-1073Allosteric domain

Domain

The large subunit is composed of 2 ATP-grasp domains that are involved in binding the 2 ATP molecules needed for carbamoyl phosphate synthesis. The N-terminal ATP-grasp domain (referred to as the carboxyphosphate synthetic component) catalyzes the ATP-dependent phosphorylation of hydrogencarbonate to carboxyphosphate and the subsequent nucleophilic attack by ammonia to form a carbamate intermediate. The C-terminal ATP-grasp domain (referred to as the carbamoyl phosphate synthetic component) then catalyzes the phosphorylation of carbamate with the second ATP to form the end product carbamoyl phosphate. The reactive and unstable enzyme intermediates are sequentially channeled from one active site to the next through the interior of the protein over a distance of at least 96 A.

Sequence similarities

Belongs to the CarB family.

Keywords

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Length
    1,073
  • Mass (Da)
    120,212
  • Last updated
    2019-07-31 v1
  • Checksum
    D581002066C16B1B
MPKKREIRSVLVIGSGPIIIGQAAEFDYSGTQACKSLKEEGCKVILVNNNPATIMTDTEIADVVYMENLEMDTLISIIEKEKPDGILGTLGGQTGLNLIIRLKDSGIIDKYDIQELGTSVESIKIAESRELFKRKMQEIEEPIAESLTVSTVSEALNFANKVGYPLIIRPAYTLGGTGGGFAYTEQELIEFVENGLKKSMMREVLIERSLLGWKEIEYELVRDSFDNCITVCNMENFDPVGIHTGDSIVVAPSQTLTDQEHQMLRDSSLKIVKALKIEGACNIQFALNPSNKEYRVIEVNPRLSRSSALASKATGYPIAKIATKIALGFSLDEIKNPVTGKTTAFFEPSLDYVVTKIPRWPFDKFYQVDKKIGTQMKSTGETMALGRTFESSLLKAVRSLDMKIKGLRIKEVQKESNEELVEHLRIPNEKRLFHIAEALRRGYEVLDIHKLTNIDNWFLEKIKNIVDFENIISTSQLNYDLLLKAKVLGFSDQEISELKGIQENEVRELRKSYGIIPSYKMVDTCAAEFDSVTQYLYSTYGEEDEIEVHNIIKKVIVIGGGPIRIGQGVEFDYCTVKALLALKEKGIKSIIINNNPETVSTDFDTGDRLYFEPLTQEDVLNIIEKEEPMGTMIMFGGQTALNLSEELERQGIRILGTSYEGIDLCEDRKRFSILLKKLGINQPRGGYATSFDEAREIAKRIGFPLLVRPSYVIGGQSIEKVNSVDELFEYLSHALDLSPLRPVLIDEYIEGIEVEVDAVSDAEDVLIPGIIEHIEKAGIHSGDSFALFPAKSLSELEEKEIVRCVEKISKAVNVKGLINIQFIVKEGKVYVIEVNPRASRTVPIISKVTGIPMIKLAVEIALGNNLKELGYYEPFYPKVPYTVVKAPIFSLEKLPGVEVALGAEMKSTGETLGIDFDYHNALYKAFKSAHLDVPSTGKVLLSFPEKVVSWSKSFVKYLQSCGYELWGTSGTAEAFKLMDIKIKEIDHEKSLELVKKRYFSMVINLPSKGKNVSNFGFKLRRTCLENSIPLFTALETAHKSIEATKNSRMTKNNVQSLNEYVDCYHNLQISKKR

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
SODZ01000002
EMBL· GenBank· DDBJ
TDX17147.1
EMBL· GenBank· DDBJ
Genomic DNA

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