A0A4Q4X8A1 · A0A4Q4X8A1_9PEZI

  • Protein
    Small nuclear ribonucleoprotein Sm D1
  • Status
    UniProtKB unreviewed (TrEMBL)
  • Amino acids
  • Protein existence
    Inferred from homology
  • Annotation score
    3/5

Function

function

Plays a role in pre-mRNA splicing as a core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.

GO annotations

all annotationsall molecular functionvirus receptor activitydna bindingrna bindingcytoskeletal motor activitycatalytic activitygtpase activitystructural molecule activitytransporter activitycytoskeletal protein bindinglipid bindingcyclase activityantioxidant activityoxidoreductase activitytransferase activityhydrolase activitylyase activityisomerase activityligase activityprotein tag activitycargo receptor activityhistone bindingprotein folding chaperonetranslation regulator activitynutrient reservoir activityreceptor ligand activitymolecular transducer activitymolecular adaptor activitytoxin activitycell adhesion mediator activitymolecular function regulator activityvirus coreceptor activitycatalytic activity, acting on a proteincatalytic activity, acting on dnacatalytic activity, acting on rnamolecular carrier activitytranscription regulator activitygeneral transcription initiation factor activitymolecular sensor activitymolecular sequestering activityatp-dependent activityother molecular functionall biological processmitotic cell cyclecytokinesiscytoplasmic translationimmune system processmuscle system processcirculatory system processrenal system processrespiratory system processcarbohydrate metabolic processgeneration of precursor metabolites and energydna replicationdna repairdna recombinationchromatin organizationdna-templated transcriptionregulation of dna-templated transcriptiontrna metabolic processprotein foldingprotein glycosylationamino acid metabolic processmodified amino acid metabolic processlipid metabolic processvitamin metabolic processsulfur compound metabolic processintracellular protein transportnucleocytoplasmic transportautophagyinflammatory responsemitochondrion organizationcytoskeleton organizationmicrotubule-based movementperoxisome organizationlysosome organizationchromosome segregationcell adhesionestablishment or maintenance of cell polarityprogrammed cell deathphotosynthesismrna metabolic processsnrna metabolic processvesicle-mediated transportreproductive processdigestive system processsignalingcell differentiationprotein catabolic processextracellular matrix organizationregulatory ncrna-mediated gene silencingtelomere organizationcell junction organizationwound healingribosome biogenesiscilium organizationanatomical structure developmentcell motilitynervous system processendocrine processprotein maturationtransmembrane transportnucleobase-containing small molecule metabolic processhepaticobiliary system processmembrane organizationprotein-containing complex assemblycell wall organization or biogenesisnitrogen cycle metabolic processprotein localization to plasma membranedefense response to other organismdetoxificationmeiotic nuclear divisionmitotic nuclear divisionmitochondrial gene expressioncarbohydrate derivative metabolic processother biological processall cellular componentnuclear chromosomeextracellular regionextracellular spacecell wallnucleusnuclear envelopenucleoplasmchromosomenucleolusmitochondrionlysosomeendosomevacuoleperoxisomeendoplasmic reticulumgolgi apparatuslipid dropletmicrotubule organizing centercytosolribosomecytoskeletonplasma membraneciliumplastidthylakoidexternal encapsulating structureextracellular matrixcytoplasmic vesicleorganelleother cellular component
Cell color indicative of number of GO terms
AspectTerm
Cellular Componentcatalytic step 2 spliceosome
Cellular Componentcommitment complex
Cellular ComponentpICln-Sm protein complex
Cellular Componentprecatalytic spliceosome
Cellular ComponentSMN-Sm protein complex
Cellular Componentspliceosomal tri-snRNP complex
Cellular ComponentU1 snRNP
Cellular ComponentU2 snRNP
Cellular ComponentU4 snRNP
Cellular ComponentU5 snRNP
Molecular FunctionRNA binding
Biological Processspliceosomal snRNP assembly

Keywords

Names & Taxonomy

Protein names

  • Recommended name
    Small nuclear ribonucleoprotein Sm D1
  • Alternative names
    • snRNP core protein D1

Gene names

    • ORF names
      DL771_011805

Organism names

  • Taxonomic identifier
  • Organism
  • Strain
    • 5C6A
  • Taxonomic lineage
    Eukaryota > Fungi > Dikarya > Ascomycota > Pezizomycotina > Sordariomycetes > Xylariomycetidae > Xylariales > Xylariales incertae sedis > Monosporascus

Accessions

  • Primary accession
    A0A4Q4X8A1

Proteomes

Interaction

Protein-protein interaction databases

Family & Domains

Features

Showing features for domain, region, compositional bias.

TypeIDPosition(s)Description
Domain2-74Sm
Region81-118Disordered
Compositional bias83-103Basic and acidic residues
Compositional bias104-118Basic residues

Sequence similarities

Belongs to the snRNP core protein family.

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Length
    118
  • Mass (Da)
    13,031
  • Last updated
    2019-07-31 v1
  • Checksum
    60054A9AD112F3F3
MKLVRFLMKCANETVTVELKNGTIVHGTITSVSPQMNTALRTVKMTPKGQDPISLDTMNIRGSTIRYFILPDSLPLDTLLIDDSVKPKNKARKEQEKARGGRGARGRGRGRGRGRGRP

Features

Showing features for compositional bias.

TypeIDPosition(s)Description
Compositional bias83-103Basic and acidic residues
Compositional bias104-118Basic residues

Keywords

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
QJOB01000779
EMBL· GenBank· DDBJ
RYP56486.1
EMBL· GenBank· DDBJ
Genomic DNA

Similar Proteins

Disclaimer

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