A0A427XKL8 · A0A427XKL8_9TREE

  • Protein
    PAN2-PAN3 deadenylation complex catalytic subunit PAN2
  • Gene
    PAN2
  • Status
    UniProtKB unreviewed (TrEMBL)
  • Amino acids
  • Protein existence
    Inferred from homology
  • Annotation score
    4/5

Function

function

Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent 5'-3' exonucleolytic degradation by XRN1. May also be involved in post-transcriptional maturation of mRNA poly(A) tails.

Caution

Lacks conserved residue(s) required for the propagation of feature annotation.
The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.

Catalytic activity

  • Exonucleolytic cleavage of poly(A) to 5'-AMP.
    EC:3.1.13.4 (UniProtKB | ENZYME | Rhea)

Cofactor

a divalent metal cation (UniProtKB | Rhea| CHEBI:60240 )

Note: Binds 2 metal cations per subunit in the catalytic exonuclease domain.

Activity regulation

Positively regulated by the regulatory subunit PAN3.

Features

Showing features for binding site.

TypeIDPosition(s)Description
Binding site925a divalent metal cation (UniProtKB | ChEBI); catalytic
Binding site927a divalent metal cation (UniProtKB | ChEBI); catalytic
Binding site1034a divalent metal cation (UniProtKB | ChEBI); catalytic
Binding site1087a divalent metal cation (UniProtKB | ChEBI); catalytic

GO annotations

AspectTerm
Cellular ComponentP-body
Cellular ComponentPAN complex
Molecular Functionmetal ion binding
Molecular Functionnucleic acid binding
Molecular Functionpoly(A)-specific ribonuclease activity
Biological ProcessmRNA processing
Biological Processnuclear-transcribed mRNA poly(A) tail shortening

Keywords

Enzyme and pathway databases

Names & Taxonomy

Protein names

  • Recommended name
    PAN2-PAN3 deadenylation complex catalytic subunit PAN2
  • EC number
  • Alternative names
    • PAB1P-dependent poly(A)-specific ribonuclease
    • Poly(A)-nuclease deadenylation complex subunit 2
      (PAN deadenylation complex subunit 2
      )

Gene names

    • Name
      PAN2
    • ORF names
      EHS24_001442

Organism names

  • Taxonomic identifier
  • Organism
  • Strain
    • DSM 27194
  • Taxonomic lineage
    Eukaryota > Fungi > Dikarya > Basidiomycota > Agaricomycotina > Tremellomycetes > Trichosporonales > Trichosporonaceae > Apiotrichum

Accessions

  • Primary accession
    A0A427XKL8

Proteomes

Subcellular Location

Keywords

Interaction

Subunit

Forms a heterotrimer with an asymmetric homodimer of the regulatory subunit PAN3 to form the poly(A)-nuclease (PAN) deadenylation complex.

Protein-protein interaction databases

Family & Domains

Features

Showing features for repeat, region, compositional bias, domain.

Type
IDPosition(s)Description
Repeat298-322WD
Region445-487Disordered
Compositional bias451-487Basic and acidic residues
Domain519-870USP
Region1136-1265Disordered
Compositional bias1152-1173Polar residues
Compositional bias1181-1211Polar residues
Compositional bias1218-1234Polar residues

Domain

Contains a pseudo-UCH domain. This ubiquitin C-terminal hydrolase (UCH)-like or ubiquitin specific protease (USP)-like domain is predicted to be catalytically inactive because it lacks the active site catalytic triad characteristic of thiol proteases, with residues at the equivalent structural positions that are incompatible with catalysis, and it cannot bind ubiquitin. It functions as a structural scaffold for intra- and intermolecular interactions in the complex.
The linker, or PAN3 interaction domain (PID), between the WD40 repeats and the pseudo-UCH domain mediates interaction with PAN3.

Sequence similarities

Belongs to the peptidase C19 family. PAN2 subfamily.

Keywords

Phylogenomic databases

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Length
    1,265
  • Mass (Da)
    138,984
  • Last updated
    2019-05-08 v1
  • Checksum
    5FCD4D802CCD7EE1
MGSYNPLSLFPLPPQVSDPKPVPSVLAVDGFADMLWVGSAAGLVSAFASPLTLTRNVQFPAHGAAPHLSQQREFQALPGLHGGVRQLRVNDREVWTLTDGGMGGRRRGGAPRWFVSDPTRSLRAMTPSPTNSHEVLAGGTGQMMLVNNSRGEVVRRFESPSTVVHLGTMQRTVVCGSGSGQVSLLDPRTGFRPAANITPVQAHTGGMSGADSQNNIIATWGWTHMQGHPIPDPLVKLYDTRTLRPLPPISFSSGPAFVMLNPLEPSKLVIAGQQGMVQVADISTGTNEFQQLDVSSFITSMALSPRGDYLAFGDGDGQLHLWTQHPTGEGAQLDDHGNLALPPFNGFEGIKPEWPDPVDPPPPIVWDDSTPLNIIGMPHYEDPLLSNFSPADYATIYSPFFNPPEPIPTSVLSSLNYQDFVGYGQLPKELKGKRNLVTARPGAGKHALRHGAIGSRRESEPRFRSEKDRHKGRHNPPPEIDEETPAGEVPKYYRKVEIKYSRFGVEDFDFGYYNRTQYSGLETDILNSYTNALLQALHYAAPVRAVAKAHICVDCQKENCLLCEAGFLFRMLEDAKGTNCQASNFSRAFSATPQASALGLMDGSNDKAMVAPSTLIQNFNRWVLSTFTTEAVVEGQNFSMRPPSMEAMSLSSPVSAINQVLGVSVKTTNTCLSCKYVSGRESTLQAIDLLWPRKPSDATSFPETLRSAIIRNSTTKATCSNCKSFAPLDSRRDLASNPMYSLPPVLSINASVSSPEHLEIWKDRPEAGGKTKHYLSRRVAFRQGPQGEIVADDSNEGIVYEVRSVVVQVQTSPENPAHLVTFSRMPQLEDEDEPKWIMFNDFLVRPVKEEEVFSFPDTWKVPAVIVLERADCPLVVDYTRLPQELDHNVLFKDHSMAWHRRASEIHHQVLSPDELPKPGTLISIDAEFVALQNEELEFRSDGTKKILRPTLMSLARVSVLRGPGQLEAVPFIDDYIRTTENVSDYLTEFSGIKAGDLDPNNSIHTLVPLKVAYKKLRLLVDLGCIFIGHGLSKDFRTINIFVPPEQVLDTVNIYTIPGRSRKLSLRFLTWFVLKRDIQTKEHDSIEDARHAYLLYKEYKAFDAEGCFDDVMEDIFAEGHKTGFKPKNEAGAIIDTSSQSRPMTPSAFPPLQSPPQSHSLSTLGLGQGQAQGQGQGHAHPAAPASITSTASVDGGSSMTMSPPPQTYSLAAHTHGAAQHAQHAAQQQQQNMHFARRKPQQGPPSPSPAARSQWGLPPAFVPGQKRW

Features

Showing features for compositional bias.

TypeIDPosition(s)Description
Compositional bias451-487Basic and acidic residues
Compositional bias1152-1173Polar residues
Compositional bias1181-1211Polar residues
Compositional bias1218-1234Polar residues

Keywords

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
RSCE01000010
EMBL· GenBank· DDBJ
RSH79396.1
EMBL· GenBank· DDBJ
Genomic DNA

Similar Proteins

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