A0A2I1FUA0 · A0A2I1FUA0_9GLOM

  • Protein
    Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
  • Status
    UniProtKB unreviewed (TrEMBL)
  • Amino acids
  • Protein existence
    Inferred from homology
  • Annotation score
    2/5

Function

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.

Catalytic activity

GO annotations

all annotationsall molecular functionvirus receptor activitydna bindingrna bindingcytoskeletal motor activitycatalytic activitygtpase activitystructural molecule activitytransporter activitycytoskeletal protein bindinglipid bindingcyclase activityantioxidant activityoxidoreductase activitytransferase activityhydrolase activitylyase activityisomerase activityligase activityprotein tag activitycargo receptor activityhistone bindingprotein folding chaperonetranslation regulator activitynutrient reservoir activityreceptor ligand activitymolecular transducer activitymolecular adaptor activitytoxin activitycell adhesion mediator activitymolecular function regulator activityvirus coreceptor activitycatalytic activity, acting on a proteincatalytic activity, acting on dnacatalytic activity, acting on rnamolecular carrier activitytranscription regulator activitygeneral transcription initiation factor activitymolecular sensor activitymolecular sequestering activityatp-dependent activityother molecular functionall biological processmitotic cell cyclecytokinesiscytoplasmic translationimmune system processmuscle system processcirculatory system processrenal system processrespiratory system processcarbohydrate metabolic processgeneration of precursor metabolites and energydna replicationdna repairdna recombinationchromatin organizationdna-templated transcriptionregulation of dna-templated transcriptiontrna metabolic processprotein foldingprotein glycosylationamino acid metabolic processmodified amino acid metabolic processlipid metabolic processvitamin metabolic processsulfur compound metabolic processintracellular protein transportnucleocytoplasmic transportautophagyinflammatory responsemitochondrion organizationcytoskeleton organizationmicrotubule-based movementperoxisome organizationlysosome organizationchromosome segregationcell adhesionestablishment or maintenance of cell polarityprogrammed cell deathphotosynthesismrna metabolic processsnrna metabolic processvesicle-mediated transportreproductive processdigestive system processsignalingcell differentiationprotein catabolic processextracellular matrix organizationregulatory ncrna-mediated gene silencingtelomere organizationcell junction organizationwound healingribosome biogenesiscilium organizationanatomical structure developmentcell motilitynervous system processendocrine processprotein maturationtransmembrane transportnucleobase-containing small molecule metabolic processhepaticobiliary system processmembrane organizationprotein-containing complex assemblycell wall organization or biogenesisnitrogen cycle metabolic processprotein localization to plasma membranedefense response to other organismdetoxificationmeiotic nuclear divisionmitotic nuclear divisionmitochondrial gene expressioncarbohydrate derivative metabolic processother biological processall cellular componentnuclear chromosomeextracellular regionextracellular spacecell wallnucleusnuclear envelopenucleoplasmchromosomenucleolusmitochondrionlysosomeendosomevacuoleperoxisomeendoplasmic reticulumgolgi apparatuslipid dropletmicrotubule organizing centercytosolribosomecytoskeletonplasma membraneciliumplastidthylakoidexternal encapsulating structureextracellular matrixcytoplasmic vesicleorganelleother cellular component
Cell color indicative of number of GO terms
AspectTerm
Cellular Componentcatalytic step 2 spliceosome
Molecular FunctionATP binding
Molecular Functionhydrolase activity
Molecular FunctionRNA binding
Molecular FunctionRNA helicase activity
Biological ProcessmRNA splicing, via spliceosome

Keywords

Enzyme and pathway databases

Names & Taxonomy

Protein names

  • Recommended name
    Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
  • EC number
  • Alternative names
    • Pre-mRNA-splicing ATP-dependent RNA helicase prp28

Gene names

    • ORF names
      RhiirA4_391288

Organism names

  • Taxonomic identifier
  • Organism
  • Strain
    • A4
  • Taxonomic lineage
    Eukaryota > Fungi > Fungi incertae sedis > Mucoromycota > Glomeromycotina > Glomeromycetes > Glomerales > Glomeraceae > Rhizophagus

Accessions

  • Primary accession
    A0A2I1FUA0

Proteomes

Organism-specific databases

Subcellular Location

Interaction

Subunit

Component of the U5 snRNP complex.

Family & Domains

Features

Showing features for compositional bias, region, domain, motif.

Type
IDPosition(s)Description
Compositional bias1-22Basic and acidic residues
Region1-226Disordered
Compositional bias29-91Basic and acidic residues
Compositional bias108-226Basic and acidic residues
Domain372-400DEAD-box RNA helicase Q
Motif372-400Q motif
Domain403-606Helicase ATP-binding
Domain617-779Helicase C-terminal

Sequence similarities

Belongs to the DEAD box helicase family. DDX23/PRP28 subfamily.

Phylogenomic databases

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Length
    800
  • Mass (Da)
    92,587
  • Last updated
    2018-02-28 v1
  • Checksum
    6204CF1092194A34
MPTERTERSRRSYADTSSSSRRHRSRSPHSRRDDSYHRHRYGREYERDSRRSGDYNELPRRGSPSHDKARYDSREIRDNENTSDKTLNNKDSTKESNGALKPKVPISLEELLQKRESEKQVNERPKFLTKEERAKVALDKRQKEVEEQRRKQDEERRQQEEFQRRAAEEARQNGYGRDRRDYYDRYDRDRYDRYDRERPRVKDRDSEKRPNDKSDTNAETEKLDDKELQAIRERYMGGERKKRKIRKMNEKKFVFDWDAGEDTSQDFNPLYANKHNAQMFGRGHFAGIDIKEQKRDRAQFYNQLLEERRTLDQKDRAEERLEIDRRKELKTMWDDRHWSEKPLTEMKERDWRIFKEDFNITTKGGSIPNPIRSWAESGLSERILNLIESIGYKSPTPIQRQAIPIGLQNRDIIGIAETGSGKTASFVIPMLVYISDLPRLTEENMSDGPYALILAPTRELAQQIEQETLKFAAPMGFNCVSIVGGHAVEEQAFNLRNGAEIIIATPGRLKDCLDRRILVLNQCTYVVMDEADRMIDMGFETDVNVILDALPVSNVKPDTDEAENPAEMLKKIGQKERYRQTVMFSATMPPAVERLAKRYLRRPAVVTIGTAGQAVDTVEQRVEMINDEGKKKARLLELLQGSFDPPIIIFVNQKKGCDVLARALNKLGYRATTLHGGKTQEQRESALAHLKNGTMDILVATDVAGRGIDVKNVSLVINYDMAKNIEDYTHRIGRTGRAGKSGVSITFLSNADADVMYDLKQMIMKSPISRVPAELSSHPSAMAKPGTYIAKRKHEETIFQ

Features

Showing features for compositional bias.

TypeIDPosition(s)Description
Compositional bias1-22Basic and acidic residues
Compositional bias29-91Basic and acidic residues
Compositional bias108-226Basic and acidic residues

Keywords

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
LLXI01000014
EMBL· GenBank· DDBJ
PKY37968.1
EMBL· GenBank· DDBJ
Genomic DNA

Similar Proteins

Disclaimer

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