A0A2A9HLK8 · A0A2A9HLK8_9LACT

  • Protein
    23S rRNA (Uracil(1939)-C(5))-methyltransferase RlmD
  • Gene
    rlmD
  • Status
    UniProtKB unreviewed (TrEMBL)
  • Amino acids
  • Protein existence
    Inferred from homology
  • Annotation score
    1/5

Function

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.

Features

Showing features for binding site, active site.

151350100150200250300350400450500
Type
IDPosition(s)Description
Binding site309S-adenosyl-L-methionine (UniProtKB | ChEBI)
Binding site338S-adenosyl-L-methionine (UniProtKB | ChEBI)
Binding site359S-adenosyl-L-methionine (UniProtKB | ChEBI)
Binding site407S-adenosyl-L-methionine (UniProtKB | ChEBI)
Active site434
Active site434Nucleophile

GO annotations

AspectTerm
Molecular FunctionrRNA (uridine-C5-)-methyltransferase activity
Biological ProcessrRNA base methylation

Keywords

Names & Taxonomy

Protein names

  • Submitted names
    • 23S rRNA (Uracil(1939)-C(5))-methyltransferase RlmD
      (EC:2.1.1.190
      )
    • 23S rRNA (Uracil-5-)-methyltransferase RumA

Gene names

    • Name
      rlmD
    • ORF names
      BW154_12035
      , EO246_09865
      , FNJ53_11875
      , GFV15_11880
      , GTP08_05360
      , M2256_001287
      , OGZ39_11415
      , OGZ50_12115
      , OGZ51_13025
      , QUD52_12010
      , QUD55_12040

Organism names

  • Taxonomic identifier
  • Organism
  • Strains
    • 3
    • 54
    • 537
    • 581
    • C2D
  • Taxonomic lineage
    Bacteria > Bacillota > Bacilli > Lactobacillales > Streptococcaceae > Lactococcus

Accessions

  • Primary accession
    A0A2A9HLK8

Proteomes

Family & Domains

Features

Showing features for domain.

TypeIDPosition(s)Description
Domain3-61TRAM

Sequence similarities

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Length
    513
  • Mass (Da)
    58,935
  • Last updated
    2018-02-28 v1
  • Checksum
    A17AF94F2F0B8BEF
MINLKIGQKLQLEIERMGINGEGIGVISGRLVFIPYALPGEEVLVEITENARNFSRAKLVKIIEKSPNRVKPQDRAYHEMSQSHIMHLSYPMQLEFKRDVMRQALEKYKPAGWRNYELRATLGMENTLGYRNKLQFQVRRLNDGTVIAGLYQEGTHHLVNLDNCLVQDPKTQEIINHICRLIEKFDLPVYDERKIGGIRTVMVRRSQKTGEVQIIFVTSTPIILDGQVWPELREEPSKRQKNSFVKFDKMLSALTEEFEEIVTVAVNFHPRKTSEIYGERTQILFNEKETITEGVLDYEFELSPRAFYQLNSEQANVLYGEAVKALNPKKDDRVIDAYCGVGTIGFAVAKKVKSVHGMDITPESIFDARENAKRLGLKNCHYEIGKAERIIPNWNKSGHRATAMIVDPPRTGLDDALLETITKFPPEKMVYVSCNVSTLAKDLVVLANYYKVEYIQSVDMFPHTARTEAVVKLTKRDEPLKIVKFEHLEEERKAEAFAKGKKRGRRPQKYGKY

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
JAOQNN010000001
EMBL· GenBank· DDBJ
MCW2280829.1
EMBL· GenBank· DDBJ
Genomic DNA
JAOWLV010000011
EMBL· GenBank· DDBJ
MDG4977477.1
EMBL· GenBank· DDBJ
Genomic DNA
JAOWLP010000013
EMBL· GenBank· DDBJ
MDG4982250.1
EMBL· GenBank· DDBJ
Genomic DNA
JAOWLY010000019
EMBL· GenBank· DDBJ
MDG4985064.1
EMBL· GenBank· DDBJ
Genomic DNA
JAUCAG010000015
EMBL· GenBank· DDBJ
MDM7538201.1
EMBL· GenBank· DDBJ
Genomic DNA
JAUCAE010000027
EMBL· GenBank· DDBJ
MDM7547737.1
EMBL· GenBank· DDBJ
Genomic DNA
WIPC01000041
EMBL· GenBank· DDBJ
MQQ81621.1
EMBL· GenBank· DDBJ
Genomic DNA
WWDJ01000028
EMBL· GenBank· DDBJ
NEX55132.1
EMBL· GenBank· DDBJ
Genomic DNA
MTJS01000005
EMBL· GenBank· DDBJ
PFG88037.1
EMBL· GenBank· DDBJ
Genomic DNA
SAXH01000016
EMBL· GenBank· DDBJ
RWR45863.1
EMBL· GenBank· DDBJ
Genomic DNA
VJWV01000015
EMBL· GenBank· DDBJ
TRW72406.1
EMBL· GenBank· DDBJ
Genomic DNA

Genome annotation databases

Similar Proteins

Disclaimer

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