A0A218LRM8 · A0A218LRM8_9POAL

  • Protein
    DNA-directed RNA polymerase subunit beta''
  • Gene
    rpoC2
  • Status
    UniProtKB unreviewed (TrEMBL)
  • Organism
  • Amino acids
  • Protein existence
    Inferred from homology
  • Annotation score
    3/5

Function

function

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.

Catalytic activity

Cofactor

Zn2+ (UniProtKB | Rhea| CHEBI:29105 )

Note: Binds 1 Zn2+ ion per subunit.

Features

Showing features for binding site.

TypeIDPosition(s)Description
Binding site220Zn2+ (UniProtKB | ChEBI)
Binding site296Zn2+ (UniProtKB | ChEBI)
Binding site303Zn2+ (UniProtKB | ChEBI)
Binding site306Zn2+ (UniProtKB | ChEBI)

GO annotations

all annotationsall molecular functionnucleotide bindingmolecular_functionnucleic acid bindingdna bindingchromatin bindingdna-binding transcription factor activityrna bindingcytoskeletal motor activitycatalytic activitynuclease activitysignaling receptor bindingstructural molecule activitytransporter activitybindingprotein bindingtranslation factor activity, rna bindinglipid bindingkinase activitytransferase activityhydrolase activityoxygen bindingenzyme regulator activitycarbohydrate bindingsignaling receptor activitytranslation regulator activitytranscription regulator activityother molecular functionall biological processcarbohydrate metabolic processgeneration of precursor metabolites and energynucleobase-containing compound metabolic processdna metabolic processtranslationlipid metabolic processtransportresponse to stresscell cyclecell communicationsignal transductioncell-cell signalingmulticellular organism developmentcircadian rhythmbiological_processmetabolic processcatabolic processbiosynthetic processresponse to light stimulusresponse to external stimulustropismresponse to biotic stimulusresponse to abiotic stimulusresponse to endogenous stimulusembryo developmentpost-embryonic developmentfruit ripeningabscissionpollinationflower developmentcellular processprogrammed cell deathphotosynthesiscellular component organizationcell growthprotein metabolic processcellular homeostasissecondary metabolic processreproductive processcell differentiationprotein modification processgrowthepigenetic regulation of gene expressionresponse to chemicalanatomical structure developmentregulation of molecular functionother biological processall cellular componentcellular_componentextracellular regioncell wallintracellular anatomical structurenucleusnuclear envelopenucleoplasmnucleoluscytoplasmmitochondrionlysosomeendosomevacuoleperoxisomeendoplasmic reticulumgolgi apparatuscytosolribosomecytoskeletonplasma membranechloroplastplastidthylakoidmembraneexternal encapsulating structureother cellular component
Cell color indicative of number of GO terms
AspectTerm
Cellular Componentchloroplast
Cellular ComponentDNA-directed RNA polymerase complex
Molecular FunctionDNA binding
Molecular FunctionDNA-directed 5'-3' RNA polymerase activity
Molecular Functionzinc ion binding
Biological ProcessDNA-templated transcription

Keywords

Enzyme and pathway databases

Names & Taxonomy

Protein names

  • Recommended name
    DNA-directed RNA polymerase subunit beta''
  • EC number
  • Alternative names
    • PEP
    • Plastid-encoded RNA polymerase subunit beta''
      (RNA polymerase subunit beta''
      )

Gene names

    • Name
      rpoC2

Encoded on

  • Chloroplast

Organism names

  • Taxonomic identifier
  • Organism
    Elymus tauri
  • Taxonomic lineage
    Eukaryota > Viridiplantae > Streptophyta > Embryophyta > Tracheophyta > Spermatophyta > Magnoliopsida > Liliopsida > Poales > Poaceae > BOP clade > Pooideae > Triticodae > Triticeae > Hordeinae > Elymus

Accessions

  • Primary accession
    A0A218LRM8

Subcellular Location

Keywords

Interaction

Subunit

In plastids the minimal PEP RNA polymerase catalytic core is composed of four subunits: alpha, beta, beta', and beta''. When a (nuclear-encoded) sigma factor is associated with the core the holoenzyme is formed, which can initiate transcription.

Family & Domains

Features

Showing features for domain, region, compositional bias.

TypeIDPosition(s)Description
Domain93-157RNA polymerase Rpb1
Domain172-370RNA polymerase Rpb1
Region620-756Disordered
Compositional bias634-657Basic and acidic residues
Compositional bias678-706Basic and acidic residues
Compositional bias729-746Acidic residues
Domain1292-1378RNA polymerase Rpb1

Sequence similarities

Belongs to the RNA polymerase beta' chain family. RpoC2 subfamily.

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Length
    1,479
  • Mass (Da)
    170,236
  • Last updated
    2017-09-27 v1
  • Checksum
    23438B89D74B741C
MAERANLVFHNKEIDGTGMKRLISRLIDHFGMGYTSHILDQLKTLGFHQATTTSISLGIEDLLTIPSKGWLVQDAEQQSFLLEKHYYYGAVHAVEKLRQSVEIWYATSEYLKQEMNSNFRITDPSNPVYLMSFSGARXXXXXXXXXXGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTADAGYLTRRLVEVVQHIIVRRRDCGTIRGISVSPQNGMTEKLFVQTLIGRVLADDIYIGSRCIAARNQDIGIGLVNRFITAFRAQPFRAQPIYIRTPFTCRSTSWICQLCYGRSPTHSDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTADLVRSPSNGKIQFNENLVHPTRTRHGQPAFLCYIDLHVTIQSQDILYSVNIPSXXXXXXXXXXXXXXEQVIAEIRAGTSTLHFKERVQKHIYSESDGEMHWSTDVYHAPEYQYGNLRRLPKASHLWILSVSMCRSSIASFSLHKDQDQMNTYGKKDREILDYSTSDRIMSNDHWNFIYPSIFQDNSDLLAKKRRNRFVIPLQYHQEQEKELISCFGISIEIPFMGVLRRNTIFAYFDDPRYRKDKKGSGIVKFRYRTLEEEYRTRAEDSEEEYETLEDEYRTREDEYEYETLEESKYGILEDEYEYETLEDEYGSPENEYGNPENEYRTLEKDSEEEYGSPESKYRTQEDEYGTLEEDSEDEYGSPGESAEEKYGTLEEDSEEDSEDEYESPEEDSILKKEGLIEHRGTKEFSLKYQKEVDRFFFILQELHILPRSSSLKILDNSIIGVDTQLTKNTRSRLGGLVRVKRKKSHTELKIFSGDIHFPEEADKILGGCLIPPERQKKDSKESKKRKNWVYVQRKKILKSKEKYFVSVRPTVAYEMDEGRNLATLFPQDLLQEENNLQIRLVNFISHENSKLTQRIYHTNSQFVRTCLVVNWEQEEKEKAGASLVEVRANDLIRDFLRIELVKSTISYTRKRYDRTSAGPIPHNRLDRANINSFYSKAKIESLSQHQEAIGTLLNRNKEYHSLMILSASNCSRIGLFKNSKHPNAIKEWNPRIPIREIFGPLGAIVASISHFSSSYYLLTHNKILLKKYLFVDNLKQTFQVLQELKYSLIDENKRIYNFDSNIMLDPFLLNCHFVHHDSWEETLAIIHLGQFICENVCLFKSHIKKSGQIFIVNMDSFVIRAAKPYLATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFSPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRSPQDKNLYFEIKKKNLFASEMRDFLFLHTELVSSDSDVTNNFYET

Features

Showing features for compositional bias.

TypeIDPosition(s)Description
Compositional bias634-657Basic and acidic residues
Compositional bias678-706Basic and acidic residues
Compositional bias729-746Acidic residues

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
KY636129
EMBL· GenBank· DDBJ
ASD44220.1
EMBL· GenBank· DDBJ
Genomic DNA

Similar Proteins

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