A0A1X6NTQ2 · A0A1X6NTQ2_PORUM
- ProteinSmall nuclear ribonucleoprotein Sm D1
- StatusUniProtKB unreviewed (TrEMBL)
- Amino acids139 (go to sequence)
- Protein existenceInferred from homology
- Annotation score3/5
Function
function
Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures.
GO annotations
all annotations | all molecular function | nucleotide binding | molecular_function | nucleic acid binding | dna binding | chromatin binding | dna-binding transcription factor activity | rna binding | cytoskeletal motor activity | catalytic activity | nuclease activity | signaling receptor binding | structural molecule activity | transporter activity | binding | protein binding | translation factor activity, rna binding | lipid binding | kinase activity | transferase activity | hydrolase activity | oxygen binding | enzyme regulator activity | carbohydrate binding | signaling receptor activity | translation regulator activity | transcription regulator activity | other molecular function | all biological process | carbohydrate metabolic process | generation of precursor metabolites and energy | nucleobase-containing compound metabolic process | dna metabolic process | translation | lipid metabolic process | transport | response to stress | cell cycle | cell communication | signal transduction | cell-cell signaling | multicellular organism development | circadian rhythm | biological_process | metabolic process | catabolic process | biosynthetic process | response to light stimulus | response to external stimulus | tropism | response to biotic stimulus | response to abiotic stimulus | response to endogenous stimulus | embryo development | post-embryonic development | fruit ripening | abscission | pollination | flower development | cellular process | programmed cell death | photosynthesis | cellular component organization | cell growth | protein metabolic process | cellular homeostasis | secondary metabolic process | reproductive process | cell differentiation | protein modification process | growth | epigenetic regulation of gene expression | response to chemical | anatomical structure development | regulation of molecular function | other biological process | all cellular component | cellular_component | extracellular region | cell wall | intracellular anatomical structure | nucleus | nuclear envelope | nucleoplasm | nucleolus | cytoplasm | mitochondrion | lysosome | endosome | vacuole | peroxisome | endoplasmic reticulum | golgi apparatus | cytosol | ribosome | cytoskeleton | plasma membrane | chloroplast | plastid | thylakoid | membrane | external encapsulating structure | other cellular component | |||
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Aspect | Term | |
---|---|---|
Cellular Component | catalytic step 2 spliceosome | |
Cellular Component | commitment complex | |
Cellular Component | pICln-Sm protein complex | |
Cellular Component | precatalytic spliceosome | |
Cellular Component | SMN-Sm protein complex | |
Cellular Component | spliceosomal tri-snRNP complex | |
Cellular Component | U1 snRNP | |
Cellular Component | U12-type spliceosomal complex | |
Cellular Component | U2 snRNP | |
Cellular Component | U4 snRNP | |
Cellular Component | U5 snRNP | |
Molecular Function | RNA binding | |
Biological Process | spliceosomal snRNP assembly |
Keywords
- Molecular function
- Biological process
Names & Taxonomy
Protein names
- Recommended nameSmall nuclear ribonucleoprotein Sm D1
- Alternative names
Gene names
Organism names
- Strain
- Taxonomic lineageEukaryota > Rhodophyta > Bangiophyceae > Bangiales > Bangiaceae > Porphyra
Accessions
- Primary accessionA0A1X6NTQ2
Proteomes
Subcellular Location
Structure
Family & Domains
Features
Showing features for domain, region, compositional bias.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Domain | 2-74 | Sm | ||||
Sequence: KLVTFLMKLRNEPVTVELKNGSCAAGTVSSVDHAMNIHLTGVRLTARGGSPIALGSLCVRGASVRYVLLPDSL | ||||||
Region | 83-139 | Disordered | ||||
Sequence: DGLRPPPSTPPTRSWSPPAAPSATPAARSSTRTGRPTRPPARPPLPPPAAARPWRQP | ||||||
Compositional bias | 86-100 | Pro residues | ||||
Sequence: RPPPSTPPTRSWSPP | ||||||
Compositional bias | 119-139 | Pro residues | ||||
Sequence: TRPPARPPLPPPAAARPWRQP |
Sequence similarities
Belongs to the snRNP core protein family.
Phylogenomic databases
Family and domain databases
Sequence
- Sequence statusComplete
- Length139
- Mass (Da)14,597
- Last updated2017-07-05 v1
- ChecksumAECBECF8ED5DE2E7
Features
Showing features for compositional bias.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Compositional bias | 86-100 | Pro residues | ||||
Sequence: RPPPSTPPTRSWSPP | ||||||
Compositional bias | 119-139 | Pro residues | ||||
Sequence: TRPPARPPLPPPAAARPWRQP |
Keywords
- Technical term