A0A1L3THP5 · A0A1L3THP5_9POTV

Function

function

An RNA-dependent RNA polymerase that plays an essential role in the virus replication.
Has RNA-binding and proteolytic activities.
Has helicase activity. It may be involved in replication.
Indispensable for virus replication.
Involved in aphid transmission, cell-to-cell and systemis movement, encapsidation of the viral RNA and in the regulation of viral RNA amplification.
Mediates the cap-independent, EIF4E-dependent translation of viral genomic RNAs (By similarity).
Binds to the cap-binding site of host EIF4E and thus interferes with the host EIF4E-dependent mRNA export and translation (By similarity).
VPg-RNA directly binds EIF4E and is a template for transcription (By similarity).
Also forms trimeric complexes with EIF4E-EIF4G, which are templates for translation
Required for aphid transmission and also has proteolytic activity. Only cleaves a Gly-Gly dipeptide at its own C-terminus. Interacts with virions and aphid stylets. Acts as a suppressor of RNA-mediated gene silencing, also known as post-transcriptional gene silencing (PTGS), a mechanism of plant viral defense that limits the accumulation of viral RNAs. May have RNA-binding activity.

Catalytic activity

  • Hydrolyzes a Gly-|-Gly bond at its own C-terminus, commonly in the sequence -Tyr-Xaa-Val-Gly-|-Gly, in the processing of the potyviral polyprotein.
    EC:3.4.22.45 (UniProtKB | ENZYME | Rhea)
  • Hydrolyzes glutaminyl bonds, and activity is further restricted by preferences for the amino acids in P6 - P1' that vary with the species of potyvirus, e.g. Glu-Xaa-Xaa-Tyr-Xaa-Gln-|-(Ser or Gly) for the enzyme from tobacco etch virus. The natural substrate is the viral polyprotein, but other proteins and oligopeptides containing the appropriate consensus sequence are also cleaved.
    EC:3.4.22.44 (UniProtKB | ENZYME | Rhea)

Features

Showing features for active site.

TypeIDPosition(s)Description
Active site787For helper component proteinase activity
Active site860For helper component proteinase activity

GO annotations

AspectTerm
Cellular Componenthelical viral capsid
Cellular Componenthost cell cytoplasmic vesicle
Cellular Componenthost cell nucleus
Cellular Componentvesicle
Molecular FunctionATP binding
Molecular Functioncysteine-type endopeptidase activity
Molecular Functionhelicase activity
Molecular Functionhydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
Molecular FunctionRNA binding
Molecular FunctionRNA-dependent RNA polymerase activity
Molecular Functionserine-type peptidase activity
Molecular Functionstructural molecule activity
Biological ProcessDNA-templated transcription
Biological Processproteolysis
Biological Processviral RNA genome replication

Keywords

Names & Taxonomy

Protein names

  • Recommended name
    Genome polyprotein

Organism names

  • Taxonomic identifier
  • Organism
  • Strain
    • GXQZ001
  • Taxonomic lineage
    Viruses > Riboviria > Orthornavirae > Pisuviricota > Stelpaviricetes > Patatavirales > Potyviridae > Potyvirus

Accessions

  • Primary accession
    A0A1L3THP5

Subcellular Location

Keywords

PTM/Processing

Keywords

Family & Domains

Features

Showing features for coiled coil, domain, compositional bias, region.

TypeIDPosition(s)Description
Coiled coil193-261
Domain303-444Peptidase S30
Domain779-901Peptidase C6
Domain1372-1524Helicase ATP-binding
Domain1543-1702Helicase C-terminal
Domain2178-2396Peptidase C4
Domain2662-2786RdRp catalytic
Compositional bias2935-2954Basic and acidic residues
Region2935-2972Disordered
Compositional bias2955-2971Polar residues

Sequence similarities

Belongs to the potyviridae genome polyprotein family.

Keywords

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Length
    3,202
  • Mass (Da)
    365,312
  • Last updated
    2017-03-15 v1
  • Checksum
    DF6BA0F0489583DD
MATIMFGDFTVQLKHNIMTEKRKRVVETTRLEKEVRMETVHVQVMESITVGCSARCAGLSAYTKSSLRKAIKEGDLSASGGCHYCGLRALVGEGRKRVISVPRLVAQQKEVVVTKEVPHFYEEEYEVEIPRVTTEIVQPVVAVTSTSNVCGTTMQTKVTSTIVTKDMMATSKPSLKQVSRSFVLTGKKEVGSYDLAIKKMDEAMQQNSVLQKQLFIRQQSTIQQKPKGAVQLRHMSFEQAKKRVELARKRQEEEKDFLSGKYEQQFYAGASIAKPMKFEGGSVGFRTKYWRPTPKKITERRAAPQCRELTYVLEEVLSLASRSGKLVEFITGGKGKSVKVCYMQKHGAILPKFSLPHEEGKYIHQELQYESIYEFLPYICMFAKYKSISANDITYGDSGLLFDERSSITTNHTKLPYFVVRGRENGKLINALEMVASMRDIQHYSQNPETQFFRGWKKVFDTMLPHVENHECTIDFTNEQCGELAAAINQSIFPVKKLSCKQCRQHIKNLSWEEYKQFLLAHMSCHRTEWEDFQKIDGMKYVKKVIETSTAENASLQTSMEIVRLTQNYKSTHMLQIQDINKALMKGPSVTQGELEQASKQLLAMTQWWKNHMALTDEDALKVFRNKRSSKALLNPSLLCDNQLDKNGNFVWGERGRHSKRFFSNYFEEVIPSEGYSKYVIRKNPNGQRELAIGSLIVPLDFERARMALQGKSITREPITMSCISRQDGNFVYPCCCVTHDDGKAFYSELKSPTKRHLVIGTSGDPKYIDLPATDADRMYIAKEGFCYLNIFLAMLVNVNEDEAKDFTKMVRDVIVPRLGKWPTMLDVATAAYMLTVFHPETRNAELPRILVDHACQTMHVIDSFGSLTVGYHVLKAGTVNQLIQFASNDLQSEMKFYRVGGEVQQRMKCETALITSIFKPKRMIQILENDPYILLMGLVSPSILIHMYRMKHFEKGVELWISKEHSVAKIFIILEQLTKRVAANDVLLEQLEMISETSERFMSILEDCPQIPPSYKTAKDLLTMYIERKASNSQLVENGFVDMNDKLYMAYEKIYSDRLKQEWRALSWLEKFSITWQLKRFTPHTEKCLTKKVVEESSASSGNFASVCFMNAQSHLRNVRNTLFQKCDQVWTASVRAFVRFIISTLHRCYSDIVYLVNICIIFSLLVQMTSVLQGIVNTARRDKALLNGWKRKEDEEAVIHLYEMCEKMEGGHPSIEKFLDHVKGVRPDLLPIAVSMTGQSEDVSAQAKTATQLQLEKIVAFMALLTMCIDNERSDAVFKVLSKLKTFFSTMGEDVKVQSLDEIQNIDEDKKLTIDFDLETNKESSSVSFDVKFEAWWNRQLEQNRVIPHYRSTGEFLEFTRETAAKIANLVATSSHTEFLIRGAVGSGKSTGLPHHLSKKGKVLLLEPTRPLAENVSKQLSFEPFYHNVTLRMRGLSKFGSSNIVVMTSGFAFHYYVNNPQQLSDFDFIIIDECHVQDSPTIAFNCALKEFEFSGKLIKVSATPPGRECEFTTQHPVKLKVEDHLSFQNFVQAQGTGSNADMIQHGNNLLVYVASYNEVDQLSRLLTEKHYKVTKVDGRTMQMGNVEIATTGTEGKPHFIVATNIIENGVTLDIDCVIDFGLKVVATLDTDNRCVRYNKQSVSYGERIQRLGRVGRCKPGFALRIGHTGKGVEEVPEFIATEAAFLSFAYGLPVTTQSVSTNILSRCTVKQARVALNFELTPFFTTNFIKYDGSMHPEIHRLLKSYKLRESEMLLTKLAIPYQFVGQWITVKEYERQGVHLNCPEKVKIPFYVHGIPDKLYEMLWDTVCKYKNDAGFGSIKSVNATKISYTLSTDPTAIPRTLAILDHLLSEEMTKKSHFDTIGSAVTGYSFSLAGIADGFRKRYLKDYTQHNIAVLQQAKSQLLEFDCNKVDINSLHNVEGIGILNAVQLQSKHEVSKFLQLKGKWDGKKFMNDAVVAIFTLVGGGWMLWDYFTRVIREPVSTQGKKRQIQKLKFRDAFDRKVGREVYADDYTMEHTFGEAYTKKGKQKGSTRTKGMGRKSRNFIHLYGVEPENYSMIRFVDPLTGHTMDEHPRVDIRMVQQEFEEIRNDMIGEGELDRQRVYHNPGLQAYFMGKNTEEALKVDLTPHRPTLLCQNSNAIAGFPEREDELRQTGLPQVISRSDVPRAKERVEMESKSVYKGLRDYSGISTLICQLTNSSDGHKETMFGVGYGSFIITNGHLFRRNNGMLTVKTWHGEFVVHNTTQLKIHFIQGKDVILIRMPKDFPPFGKRNLFRQPKREERVCMVGTNFQEKSLRATVSESSMILPEGKGSFWIHWITTQDGFCGLPLVSVNDGHIVGIHGLTSNDSEKNFFVPLTDGFEKEYLENADNLSWDKHWFWEPSKIAWGSLNLVEEQPKEEFKISKLVSDLFGNTVTVQGRKERWVLDAMEGNLAACGQADSALVTKHVVKGKCPYFAQYLSVNQEAKSFFEPLMGAYQPSRLNKDAFKRDFFKYNKPVVLNEVDFQSFERAVAGVKLMMMEFDFKECVYVTDPNEIYDSLNMKAAVGAQYKGKKQDYFSGMDSFDKERLLYLSCERLFYGEKGVWNGSLKAELRPIEKVQANKTRTFTAAPIDTLLGAKVCVDDFNNQFYSLNLTCPWTVGMTKFYKGWDKLMRSLPDGWVYCHADGSQFDSSLTPLLLNAVLDVRSFFMEDWWVGREMLENLYAEIVYTPILTPDGTIFKKFRGNNSGQPSTVVDNTLMVVIAMYYSCCKQGWSEEDIQERLVFFANGDDIILAVSDKDTWLYDTLSTSFAELGLNYNFEERTKKREELWFMSHQAMLVDGIYIPKLEPERIVSILEWDRSKELMHRTEAICAAMIEAWGYTELLQEIRKFYLWLLNKDEFKELASSGKAPYIAETALKKLYTDVNAQTSELQRYLEVLDFNHADDCCESVSLQSGKEKEGDMDAGKDPKKSTSSSKGAGTSSKDVNVGSKGKVVPRLQKITRKMNLPMVEGKIILSLDHLLEYKPNQVDLFNTRATRTQFEAWYNAVKDEYELDDEQMGVVMNGFMVWCIDNGTSPDANGVWVMMDGEEQIEYPLKPIVENAKPTLRQIMHHFSDAAEAYIEMRNSESPYMPRYGLLRNLRDRELARYAFDFYEVTSKTPNRAREAIAQMKAAALSGVNNKLFGLDGNISTNSENTERHTARDVNQNMHTLLGMGSQQ

Features

Showing features for compositional bias.

TypeIDPosition(s)Description
Compositional bias2935-2954Basic and acidic residues
Compositional bias2955-2971Polar residues

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
KX834322
EMBL· GenBank· DDBJ
APH81264.1
EMBL· GenBank· DDBJ
Genomic RNA

Similar Proteins

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