A0A1L3MZ39 · A0A1L3MZ39_9ROSI

  • Protein
    Cytochrome b6
  • Gene
    petB
  • Status
    UniProtKB unreviewed (TrEMBL)
  • Amino acids
  • Protein existence
    Inferred from homology
  • Annotation score
    3/5

Function

function

Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions.

Miscellaneous

Heme 1 (or BH or b566) is high-potential and absorbs at about 566 nm, and heme 2 (or BL or b562) is low-potential and absorbs at about 562 nm.

Cofactor

Protein has several cofactor binding sites:
heme b (UniProtKB | Rhea| CHEBI:60344 )

Note: Binds 2 heme b groups non-covalently with two histidine residues as axial ligands.
heme c (UniProtKB | Rhea| CHEBI:61717 )

Note: Binds one heme group covalently by a single cysteine link with no axial amino acid ligand. This heme was named heme ci.

Features

Showing features for binding site.

121520406080100120140160180200
TypeIDPosition(s)Description
Binding site35heme c (UniProtKB | ChEBI); covalent
Binding site86Fe (UniProtKB | ChEBI) of heme b 2 (UniProtKB | ChEBI); axial binding residue
Binding site100Fe (UniProtKB | ChEBI) of heme b 1 (UniProtKB | ChEBI); axial binding residue
Binding site187Fe (UniProtKB | ChEBI) of heme b 2 (UniProtKB | ChEBI); axial binding residue
Binding site202Fe (UniProtKB | ChEBI) of heme b 1 (UniProtKB | ChEBI); axial binding residue

GO annotations

AspectTerm
Cellular Componentchloroplast thylakoid membrane
Molecular Functionelectron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity
Molecular Functionmetal ion binding
Molecular Functionoxidoreductase activity
Biological Processphotosynthesis
Biological Processrespiratory electron transport chain

Keywords

Names & Taxonomy

Protein names

  • Recommended name
    Cytochrome b6

Gene names

    • Name
      petB

Encoded on

  • Chloroplast

Organism names

  • Taxonomic identifier
  • Organism
  • Taxonomic lineage
    Eukaryota > Viridiplantae > Streptophyta > Embryophyta > Tracheophyta > Spermatophyta > Magnoliopsida > eudicotyledons > Gunneridae > Pentapetalae > rosids > fabids > Malpighiales > Salicaceae > Saliceae > Populus

Accessions

  • Primary accession
    A0A1L3MZ39

Subcellular Location

Membrane
; Multi-pass membrane protein
Plastid, chloroplast thylakoid membrane
; Multi-pass membrane protein

Features

Showing features for transmembrane.

TypeIDPosition(s)Description
Transmembrane32-58Helical
Transmembrane88-106Helical
Transmembrane118-138Helical
Transmembrane184-203Helical

Keywords

Interaction

Subunit

The 4 large subunits of the cytochrome b6-f complex are cytochrome b6, subunit IV (17 kDa polypeptide, PetD), cytochrome f and the Rieske protein, while the 4 small subunits are PetG, PetL, PetM and PetN. The complex functions as a dimer.

Family & Domains

Features

Showing features for domain.

TypeIDPosition(s)Description
Domain4-215Cytochrome b/b6 N-terminal region profile

Sequence similarities

Belongs to the cytochrome b family. PetB subfamily.

Keywords

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Length
    215
  • Mass (Da)
    24,181
  • Last updated
    2017-03-15 v1
  • MD5 Checksum
    72645EC9D837D70FC2B27245F97A21A5
MSKVYDWFEERLEIQTIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLGVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
KX425622
EMBL· GenBank· DDBJ
APH07592.1
EMBL· GenBank· DDBJ
Genomic DNA
MK267321
EMBL· GenBank· DDBJ
AZZ08799.1
EMBL· GenBank· DDBJ
Genomic DNA
MK341062
EMBL· GenBank· DDBJ
QDF64039.1
EMBL· GenBank· DDBJ
Genomic DNA
MT482539
EMBL· GenBank· DDBJ
QPF24010.1
EMBL· GenBank· DDBJ
Genomic DNA

Genome annotation databases

Similar Proteins

Disclaimer

Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. Our staff consists of biologists and biochemists that are not trained to give medical advice.
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