A0A1I9LLF2 · A0A1I9LLF2_ARATH
- ProteinTwo-component response regulator
- GeneRR1
- StatusUniProtKB unreviewed (TrEMBL)
- Amino acids620 (go to sequence)
- Protein existenceEvidence at protein level
- Annotation score2/5
Variants
Variant ID(s) | Position(s) | Change | Description | Clinical significance | Provenance | ||
---|---|---|---|---|---|---|---|
tmp_3_5757249_G_C | 116 | G>A | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated - low confidence (1) Somatic: No Accession: 3:g.5757249G>C Codon: GGT/GCT Consequence type: missense Cytogenetic band: Genomic location: 3:g.5757249G>C Locations: - p.Gly116Ala (EnsemblPlants:AT3G16857.3) - c.347G>C (EnsemblPlants:AT3G16857.3) Source type: large scale study Cross-references: | |||||||
tmp_3_5757293_T_G | 131 | S>A | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0) Somatic: No Accession: 3:g.5757293T>G Codon: TCC/GCC Consequence type: missense Cytogenetic band: Genomic location: 3:g.5757293T>G Locations: - p.Ser131Ala (EnsemblPlants:AT3G16857.3) - c.391T>G (EnsemblPlants:AT3G16857.3) Source type: large scale study Cross-references: | |||||||
ENSVATH02154279 | 159 | D>E | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.05) Somatic: No Accession: 3:g.5757379C>A Codon: GAC/GAA Consequence type: missense Cytogenetic band: Genomic location: 3:g.5757379C>A Locations: - p.Asp159Glu (EnsemblPlants:AT3G16857.3) - c.477C>A (EnsemblPlants:AT3G16857.3) Source type: large scale study Cross-references: | |||||||
tmp_3_5757382_A_T | 160 | E>D | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (1) Somatic: No Accession: 3:g.5757382A>T Codon: GAA/GAT Consequence type: missense Cytogenetic band: Genomic location: 3:g.5757382A>T Locations: - p.Glu160Asp (EnsemblPlants:AT3G16857.3) - c.480A>T (EnsemblPlants:AT3G16857.3) Source type: large scale study Cross-references: | |||||||
ENSVATH05846848 | 240 | M>I | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.31) Somatic: No Accession: 3:g.5757773G>C Codon: ATG/ATC Consequence type: missense Cytogenetic band: Genomic location: 3:g.5757773G>C Locations: - p.Met240Ile (EnsemblPlants:AT3G16857.3) - c.720G>C (EnsemblPlants:AT3G16857.3) Source type: large scale study Cross-references: | |||||||
tmp_3_5757900_C_T | 283 | P>S | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.67) Somatic: No Accession: 3:g.5757900C>T Codon: CCT/TCT Consequence type: missense Cytogenetic band: Genomic location: 3:g.5757900C>T Locations: - p.Pro283Ser (EnsemblPlants:AT3G16857.3) - c.847C>T (EnsemblPlants:AT3G16857.3) Source type: large scale study Cross-references: | |||||||
tmp_3_5757903_G_A | 284 | A>T | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.72) Somatic: No Accession: 3:g.5757903G>A Codon: GCG/ACG Consequence type: missense Cytogenetic band: Genomic location: 3:g.5757903G>A Locations: - p.Ala284Thr (EnsemblPlants:AT3G16857.3) - c.850G>A (EnsemblPlants:AT3G16857.3) Source type: large scale study Cross-references: | |||||||
ENSVATH02154285 | 286 | V>I | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.44) Somatic: No Accession: 3:g.5757909G>A Codon: GTC/ATC Consequence type: missense Cytogenetic band: Genomic location: 3:g.5757909G>A Locations: - p.Val286Ile (EnsemblPlants:AT3G16857.3) - c.856G>A (EnsemblPlants:AT3G16857.3) Source type: large scale study Cross-references: | |||||||
ENSVATH13933216 | 292 | P>L | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.01) Somatic: No Accession: 3:g.5757928C>T Codon: CCG/CTG Consequence type: missense Cytogenetic band: Genomic location: 3:g.5757928C>T Locations: - p.Pro292Leu (EnsemblPlants:AT3G16857.3) - c.875C>T (EnsemblPlants:AT3G16857.3) Source type: large scale study Cross-references: | |||||||
ENSVATH05846849 | 323 | P>S | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.86) Somatic: No Accession: 3:g.5758020C>T Codon: CCC/TCC Consequence type: missense Cytogenetic band: Genomic location: 3:g.5758020C>T Locations: - p.Pro323Ser (EnsemblPlants:AT3G16857.3) - c.967C>T (EnsemblPlants:AT3G16857.3) Source type: large scale study Cross-references: | |||||||
ENSVATH02154286 | 325 | Q>P | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.22) Somatic: No Accession: 3:g.5758027A>C Codon: CAG/CCG Consequence type: missense Cytogenetic band: Genomic location: 3:g.5758027A>C Locations: - p.Gln325Pro (EnsemblPlants:AT3G16857.3) - c.974A>C (EnsemblPlants:AT3G16857.3) Source type: large scale study Cross-references: | |||||||
ENSVATH00327998 | 335 | V>I | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (1) Somatic: No Accession: 3:g.5758056G>A Codon: GTC/ATC Consequence type: missense Cytogenetic band: Genomic location: 3:g.5758056G>A Locations: - p.Val335Ile (EnsemblPlants:AT3G16857.3) - c.1003G>A (EnsemblPlants:AT3G16857.3) Source type: large scale study Cross-references: | |||||||
ENSVATH05846850 | 343 | L>P | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.04) Somatic: No Accession: 3:g.5758081T>C Codon: CTT/CCT Consequence type: missense Cytogenetic band: Genomic location: 3:g.5758081T>C Locations: - p.Leu343Pro (EnsemblPlants:AT3G16857.3) - c.1028T>C (EnsemblPlants:AT3G16857.3) Source type: large scale study Cross-references: | |||||||
ENSVATH10729802 | 402 | R>P | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.24) Somatic: No Accession: 3:g.5758258G>C Codon: CGC/CCC Consequence type: missense Cytogenetic band: Genomic location: 3:g.5758258G>C Locations: - p.Arg402Pro (EnsemblPlants:AT3G16857.3) - c.1205G>C (EnsemblPlants:AT3G16857.3) Source type: large scale study Cross-references: | |||||||
tmp_3_5758264_C_T | 404 | S>F | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.18) Somatic: No Accession: 3:g.5758264C>T Codon: TCC/TTC Consequence type: missense Cytogenetic band: Genomic location: 3:g.5758264C>T Locations: - p.Ser404Phe (EnsemblPlants:AT3G16857.3) - c.1211C>T (EnsemblPlants:AT3G16857.3) Source type: large scale study Cross-references: | |||||||
tmp_3_5758333_C_G | 427 | T>S | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.51) Somatic: No Accession: 3:g.5758333C>G Codon: ACT/AGT Consequence type: missense Cytogenetic band: Genomic location: 3:g.5758333C>G Locations: - p.Thr427Ser (EnsemblPlants:AT3G16857.3) - c.1280C>G (EnsemblPlants:AT3G16857.3) Source type: large scale study Cross-references: | |||||||
ENSVATH05846853 | 437 | S>L | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.79) Somatic: No Accession: 3:g.5758363C>T Codon: TCG/TTG Consequence type: missense Cytogenetic band: Genomic location: 3:g.5758363C>T Locations: - p.Ser437Leu (EnsemblPlants:AT3G16857.3) - c.1310C>T (EnsemblPlants:AT3G16857.3) Source type: large scale study Cross-references: | |||||||
tmp_3_5758395_C_A | 448 | P>T | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.69) Somatic: No Accession: 3:g.5758395C>A Codon: CCC/ACC Consequence type: missense Cytogenetic band: Genomic location: 3:g.5758395C>A Locations: - p.Pro448Thr (EnsemblPlants:AT3G16857.3) - c.1342C>A (EnsemblPlants:AT3G16857.3) Source type: large scale study Cross-references: | |||||||
tmp_3_5758435_C_T | 461 | S>L | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.01) Somatic: No Accession: 3:g.5758435C>T Codon: TCA/TTA Consequence type: missense Cytogenetic band: Genomic location: 3:g.5758435C>T Locations: - p.Ser461Leu (EnsemblPlants:AT3G16857.3) - c.1382C>T (EnsemblPlants:AT3G16857.3) Source type: large scale study Cross-references: | |||||||
ENSVATH05846854 | 463 | P>R | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.4) Somatic: No Accession: 3:g.5758441C>G Codon: CCG/CGG Consequence type: missense Cytogenetic band: Genomic location: 3:g.5758441C>G Locations: - p.Pro463Arg (EnsemblPlants:AT3G16857.3) - c.1388C>G (EnsemblPlants:AT3G16857.3) Source type: large scale study Cross-references: | |||||||
ENSVATH00328005 | 470 | Y>F | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (1) Somatic: No Accession: 3:g.5758462A>T Codon: TAC/TTC Consequence type: missense Cytogenetic band: Genomic location: 3:g.5758462A>T Locations: - p.Tyr470Phe (EnsemblPlants:AT3G16857.3) - c.1409A>T (EnsemblPlants:AT3G16857.3) Source type: large scale study Cross-references: | |||||||
ENSVATH00328007 | 511 | S>A | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.61) Somatic: No Accession: 3:g.5758584T>G Codon: TCA/GCA Consequence type: missense Cytogenetic band: Genomic location: 3:g.5758584T>G Locations: - p.Ser511Ala (EnsemblPlants:AT3G16857.3) - c.1531T>G (EnsemblPlants:AT3G16857.3) Source type: large scale study Cross-references: | |||||||
tmp_3_5758644_A_C | 531 | N>H | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.24) Somatic: No Accession: 3:g.5758644A>C Codon: AAC/CAC Consequence type: missense Cytogenetic band: Genomic location: 3:g.5758644A>C Locations: - p.Asn531His (EnsemblPlants:AT3G16857.3) - c.1591A>C (EnsemblPlants:AT3G16857.3) Source type: large scale study Cross-references: | |||||||
ENSVATH13933218 | 540 | G>D | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.11) Somatic: No Accession: 3:g.5758672G>A Codon: GGC/GAC Consequence type: missense Cytogenetic band: Genomic location: 3:g.5758672G>A Locations: - p.Gly540Asp (EnsemblPlants:AT3G16857.3) - c.1619G>A (EnsemblPlants:AT3G16857.3) Source type: large scale study Cross-references: | |||||||
ENSVATH05846855 | 546 | P>T | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.76) Somatic: No Accession: 3:g.5758689C>A Codon: CCA/ACA Consequence type: missense Cytogenetic band: Genomic location: 3:g.5758689C>A Locations: - p.Pro546Thr (EnsemblPlants:AT3G16857.3) - c.1636C>A (EnsemblPlants:AT3G16857.3) Source type: large scale study Cross-references: | |||||||
ENSVATH05846856 | 551 | V>A | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.61) Somatic: No Accession: 3:g.5758705T>C Codon: GTA/GCA Consequence type: missense Cytogenetic band: Genomic location: 3:g.5758705T>C Locations: - p.Val551Ala (EnsemblPlants:AT3G16857.3) - c.1652T>C (EnsemblPlants:AT3G16857.3) Source type: large scale study Cross-references: | |||||||
tmp_3_5758710_C_T | 553 | H>Y | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (1) Somatic: No Accession: 3:g.5758710C>T Codon: CAC/TAC Consequence type: missense Cytogenetic band: Genomic location: 3:g.5758710C>T Locations: - p.His553Tyr (EnsemblPlants:AT3G16857.3) - c.1657C>T (EnsemblPlants:AT3G16857.3) Source type: large scale study Cross-references: | |||||||
ENSVATH13933219 | 556 | V>F | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.81) Somatic: No Accession: 3:g.5758719G>T Codon: GTT/TTT Consequence type: missense Cytogenetic band: Genomic location: 3:g.5758719G>T Locations: - p.Val556Phe (EnsemblPlants:AT3G16857.3) - c.1666G>T (EnsemblPlants:AT3G16857.3) Source type: large scale study Cross-references: | |||||||
tmp_3_5758728_G_A | 559 | D>N | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.55) Somatic: No Accession: 3:g.5758728G>A Codon: GAC/AAC Consequence type: missense Cytogenetic band: Genomic location: 3:g.5758728G>A Locations: - p.Asp559Asn (EnsemblPlants:AT3G16857.3) - c.1675G>A (EnsemblPlants:AT3G16857.3) Source type: large scale study Cross-references: | |||||||
ENSVATH00328008 | 562 | G>S | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.18) Somatic: No Accession: 3:g.5758737G>A Codon: GGT/AGT Consequence type: missense Cytogenetic band: Genomic location: 3:g.5758737G>A Locations: - p.Gly562Ser (EnsemblPlants:AT3G16857.3) - c.1684G>A (EnsemblPlants:AT3G16857.3) Source type: large scale study Cross-references: | |||||||
tmp_3_5758740_G_A | 563 | G>S | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.4) Somatic: No Accession: 3:g.5758740G>A Codon: GGT/AGT Consequence type: missense Cytogenetic band: Genomic location: 3:g.5758740G>A Locations: - p.Gly563Ser (EnsemblPlants:AT3G16857.3) - c.1687G>A (EnsemblPlants:AT3G16857.3) Source type: large scale study Cross-references: | |||||||
ENSVATH13933220 | 574 | T>M | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.05) Somatic: No Accession: 3:g.5758774C>T Codon: ACG/ATG Consequence type: missense Cytogenetic band: Genomic location: 3:g.5758774C>T Locations: - p.Thr574Met (EnsemblPlants:AT3G16857.3) - c.1721C>T (EnsemblPlants:AT3G16857.3) Source type: large scale study Cross-references: | |||||||
ENSVATH02154290 | 577 | A>S | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.42) Somatic: No Accession: 3:g.5758782G>T Codon: GCA/TCA Consequence type: missense Cytogenetic band: Genomic location: 3:g.5758782G>T Locations: - p.Ala577Ser (EnsemblPlants:AT3G16857.3) - c.1729G>T (EnsemblPlants:AT3G16857.3) Source type: large scale study Cross-references: | |||||||
ENSVATH00328009 | 578 | T>A | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.75) Somatic: No Accession: 3:g.5758785A>G Codon: ACA/GCA Consequence type: missense Cytogenetic band: Genomic location: 3:g.5758785A>G Locations: - p.Thr578Ala (EnsemblPlants:AT3G16857.3) - c.1732A>G (EnsemblPlants:AT3G16857.3) Source type: large scale study Cross-references: | |||||||
ENSVATH10729883 | 602 | A>G | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (1) Somatic: No Accession: 3:g.5759081C>G Codon: GCA/GGA Consequence type: missense Cytogenetic band: Genomic location: 3:g.5759081C>G Locations: - p.Ala602Gly (EnsemblPlants:AT3G16857.3) - c.1805C>G (EnsemblPlants:AT3G16857.3) Source type: large scale study Cross-references: | |||||||
ENSVATH05846866 | 617 | N>D | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.15) Somatic: No Accession: 3:g.5759125A>G Codon: AAC/GAC Consequence type: missense Cytogenetic band: Genomic location: 3:g.5759125A>G Locations: - p.Asn617Asp (EnsemblPlants:AT3G16857.3) - c.1849A>G (EnsemblPlants:AT3G16857.3) Source type: large scale study Cross-references: |