A0A1E3V278 · A0A1E3V278_9GAMM

Function

function

Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs.

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.

Catalytic activity

  • Endonucleolytic cleavage of single-stranded RNA in A- and U-rich regions.
    EC:3.1.26.12 (UniProtKB | ENZYME | Rhea)

Cofactor

Protein has several cofactor binding sites:
Mg2+ (UniProtKB | Rhea| CHEBI:18420 )

Note: Binds 1 Mg2+ ion per subunit.
Zn2+ (UniProtKB | Rhea| CHEBI:29105 )

Note: Binds 2 Zn2+ ions per homotetramer.

Features

Showing features for binding site.

TypeIDPosition(s)Description
Binding site302Mg2+ (UniProtKB | ChEBI); catalytic
Binding site345Mg2+ (UniProtKB | ChEBI); catalytic
Binding site403Zn2+ (UniProtKB | ChEBI); ligand shared between dimeric partners
Binding site406Zn2+ (UniProtKB | ChEBI); ligand shared between dimeric partners

GO annotations

AspectTerm
Cellular Componentcytoplasm
Cellular Componentcytoplasmic side of plasma membrane
Molecular Functionmagnesium ion binding
Molecular Functionribonuclease E activity
Molecular FunctionRNA endonuclease activity
Molecular FunctionrRNA binding
Molecular FunctiontRNA binding
Molecular Functionzinc ion binding
Biological ProcessmRNA catabolic process
Biological ProcessrRNA processing
Biological ProcesstRNA processing

Keywords

Enzyme and pathway databases

Names & Taxonomy

Protein names

  • Recommended name
    Ribonuclease E
  • EC number
  • Short names
    RNase E

Gene names

    • Name
      rne
    • ORF names
      ABT47_21010

Organism names

  • Taxonomic identifier
  • Organism
  • Strain
    • T17
  • Taxonomic lineage
    Bacteria > Pseudomonadota > Gammaproteobacteria > Alteromonadales > Shewanellaceae > Shewanella

Accessions

  • Primary accession
    A0A1E3V278

Proteomes

Subcellular Location

Cytoplasm
Cell inner membrane
; Peripheral membrane protein

Keywords

Interaction

Subunit

Component of the RNA degradosome, which is a multiprotein complex involved in RNA processing and mRNA degradation. Within the RNA degradosome, RNase E assembles into a homotetramer formed by a dimer of dimers.

Protein-protein interaction databases

Family & Domains

Features

Showing features for domain, region, compositional bias.

TypeIDPosition(s)Description
Domain39-119S1 motif
Region403-406Required for zinc-mediated homotetramerization and catalytic activity
Compositional bias572-620Basic and acidic residues
Region572-653Disordered
Compositional bias627-653Basic and acidic residues
Region761-849Disordered
Compositional bias793-809Basic and acidic residues
Region979-998Disordered
Region1048-1092Disordered

Sequence similarities

Belongs to the RNase E/G family. RNase E subfamily.
Belongs to the RNase E/G family. RNase G subfamily.

Phylogenomic databases

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Length
    1,092
  • Mass (Da)
    120,886
  • Last updated
    2017-01-18 v1
  • Checksum
    F4BE5838E0515DA0
MKRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGADRHGFLPLKEIAREYFPKGYSFQGRPNIKEVVSEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKEAMADLEVPAGMGLIVRTAGVGKESTELKWDLKVLQHHWAAITEAAQTKGAPFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIFEEAKQHIALVRPDFVERVKLYEAEVPLFTHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVHHDRARVQLGRISRFGLMEMSRQRLRPSLEESAAHICPRCHGQGTIRSTESLALSILRLMEEEAIKENTSQIEAIVPVDVAAFLLNEKRKAIRITEQRHDVEVYVIPDPHMMTPDYRVIRHRTDDEIDESSYKRIEQPEAKLYEPRKLERTAAPAPALKGFAAPQKVEQDTAPVAKVETAQPGFFSKLFSAIGAFFSSSDNAVAEKSTETKKQDSQATNANRRNRRNDTRRTRNPQDTEKAKEGTREPRTRNAKKVADAPQAQERPIREKDESAKRAKPEPKPRNQAVKEVIADVQDEAPKQEVVRERRQRRNMRRKVRIDNTTDVVETSIQEEAILAELVAINADVTVEVQPEVKAPRRRQPRKEVTVANEVGDTTVSEAADVVETKPADAIVDMPVVESQADTQVDAKLDTQPAVIDEDNAEANVDADDKAKRESRDGQRRSRRSPRHLRAAGQRRRRDEDEQGTTAPAQFIPNDALGEDQDYPAPTAVVENANLTEQTVAETVAVEVKSTATQPAPIVHTADVISSTEAAVSQSIATESTVSDTTVTESSAEIKSNAVVAEVTSEPVVNDKAAETVKASDAEPQSATEPAVQATEVMQIVTDITPEAKAEEVTPVTEKTEPKEAVKSVASAPMAKPAAFVKPQAKPVMAQAATAQPTEVVVSKPKASSRFGAMVSSEMTKPTVEVRAQVEVPKGREYENTATAEATEPKLKHSNSAESDMARP

Features

Showing features for compositional bias.

TypeIDPosition(s)Description
Compositional bias572-620Basic and acidic residues
Compositional bias627-653Basic and acidic residues
Compositional bias793-809Basic and acidic residues

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
LDOA01000001
EMBL· GenBank· DDBJ
ODR87555.1
EMBL· GenBank· DDBJ
Genomic DNA

Genome annotation databases

Similar Proteins

Disclaimer

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