A0A1D8PL68 · RL40B_CANAL
- ProteinLarge ribosomal subunit protein eL40
- GeneRPL40B
- StatusUniProtKB reviewed (Swiss-Prot)
- Amino acids
- Protein existenceEvidence at protein level
- Annotation score3/5
Function
function
Component of the ribosome, a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell. The small ribosomal subunit (SSU) binds messenger RNAs (mRNAs) and translates the encoded message by selecting cognate aminoacyl-transfer RNA (tRNA) molecules. The large subunit (LSU) contains the ribosomal catalytic site termed the peptidyl transferase center (PTC), which catalyzes the formation of peptide bonds, thereby polymerizing the amino acids delivered by tRNAs into a polypeptide chain. The nascent polypeptides leave the ribosome through a tunnel in the LSU and interact with protein factors that function in enzymatic processing, targeting, and the membrane insertion of nascent chains at the exit of the ribosomal tunnel.
Cofactor
Features
Showing features for binding site.
Type | ID | Position(s) | Description | ||
---|---|---|---|---|---|
Binding site | 20 | Zn2+ 101 (UniProtKB | ChEBI) | |||
Binding site | 23 | Zn2+ 101 (UniProtKB | ChEBI) | |||
Binding site | 34 | Zn2+ 101 (UniProtKB | ChEBI) | |||
Binding site | 39 | Zn2+ 101 (UniProtKB | ChEBI) | |||
GO annotations
Aspect | Term | |
---|---|---|
Cellular Component | cytoplasm | |
Cellular Component | ribonucleoprotein complex | |
Cellular Component | ribosome | |
Molecular Function | structural constituent of ribosome | |
Biological Process | translation |
Keywords
- Molecular function
- Ligand
Names & Taxonomy
Protein names
- Recommended nameLarge ribosomal subunit protein eL40
- Alternative names
Gene names
Organism names
- Strain
- Taxonomic lineageEukaryota > Fungi > Dikarya > Ascomycota > Saccharomycotina > Pichiomycetes > Debaryomycetaceae > Candida/Lodderomyces clade > Candida
Accessions
- Primary accessionA0A1D8PL68
Proteomes
Organism-specific databases
Subcellular Location
PTM/Processing
Features
Showing features for chain.
Type | ID | Position(s) | Description | ||
---|---|---|---|---|---|
Chain | PRO_0000456500 | 1-52 | Large ribosomal subunit protein eL40 | ||
Interaction
Subunit
Component of the large ribosomal subunit (PubMed:35613268).
Mature ribosomes consist of a small (40S) and a large (60S) subunit (PubMed:35613268).
The 40S subunit contains about 32 different proteins and 1 molecule of RNA (18S) (PubMed:35613268).
The 60S subunit contains 45 different proteins and 3 molecules of RNA (25S, 5.8S and 5S) (PubMed:35613268).
Mature ribosomes consist of a small (40S) and a large (60S) subunit (PubMed:35613268).
The 40S subunit contains about 32 different proteins and 1 molecule of RNA (18S) (PubMed:35613268).
The 60S subunit contains 45 different proteins and 3 molecules of RNA (25S, 5.8S and 5S) (PubMed:35613268).
Protein-protein interaction databases
Structure
Sequence
- Sequence statusComplete
- Length52
- Mass (Da)6,061
- Last updated2017-01-18 v1
- MD5 Checksum4095F213AF09A7FF0D63383A277CFF25
Keywords
- Technical term
Sequence databases
Nucleotide Sequence | Protein Sequence | Molecule Type | Status | |
---|---|---|---|---|
CP017626 EMBL· GenBank· DDBJ | AOW28892.1 EMBL· GenBank· DDBJ | Genomic DNA |