A0A1D6IEG9 · CRP1_MAIZE
- ProteinPentatricopeptide repeat-containing protein CRP1, chloroplastic
- GeneCRP1
- StatusUniProtKB reviewed (Swiss-Prot)
- Organism
- Amino acids668 (go to sequence)
- Protein existenceEvidence at protein level
- Annotation score5/5
Function
function
Required for the translation of the chloroplast petA and petD mRNAs. Required for the processing of the petD mRNA from a polycistronic precursor (PubMed:8039510).
Binds with high affinity to the 5'-UTR of the chloroplastic petA transcript (PubMed:18669444).
Activates psaC and petA translation by binding their 5'-UTRs (PubMed:16141451, PubMed:23735295).
Binds with high affinity to the 5'-UTR of the chloroplastic petA transcript (PubMed:18669444).
Activates psaC and petA translation by binding their 5'-UTRs (PubMed:16141451, PubMed:23735295).
GO annotations
all annotations | all molecular function | nucleotide binding | molecular_function | nucleic acid binding | dna binding | chromatin binding | dna-binding transcription factor activity | rna binding | cytoskeletal motor activity | catalytic activity | nuclease activity | signaling receptor binding | structural molecule activity | transporter activity | binding | protein binding | translation factor activity, rna binding | lipid binding | kinase activity | transferase activity | hydrolase activity | oxygen binding | enzyme regulator activity | carbohydrate binding | signaling receptor activity | translation regulator activity | transcription regulator activity | other molecular function | all biological process | carbohydrate metabolic process | generation of precursor metabolites and energy | nucleobase-containing compound metabolic process | dna metabolic process | translation | lipid metabolic process | transport | response to stress | cell cycle | cell communication | signal transduction | cell-cell signaling | multicellular organism development | circadian rhythm | biological_process | metabolic process | catabolic process | biosynthetic process | response to light stimulus | response to external stimulus | tropism | response to biotic stimulus | response to abiotic stimulus | response to endogenous stimulus | embryo development | post-embryonic development | fruit ripening | abscission | pollination | flower development | cellular process | programmed cell death | photosynthesis | cellular component organization | cell growth | protein metabolic process | cellular homeostasis | secondary metabolic process | reproductive process | cell differentiation | protein modification process | growth | epigenetic regulation of gene expression | response to chemical | anatomical structure development | regulation of molecular function | other biological process | all cellular component | cellular_component | extracellular region | cell wall | intracellular anatomical structure | nucleus | nuclear envelope | nucleoplasm | nucleolus | cytoplasm | mitochondrion | lysosome | endosome | vacuole | peroxisome | endoplasmic reticulum | golgi apparatus | cytosol | ribosome | cytoskeleton | plasma membrane | chloroplast | plastid | thylakoid | membrane | external encapsulating structure | other cellular component | |||
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Aspect | Term | |
---|---|---|
Cellular Component | chloroplast | |
Cellular Component | chloroplast nucleoid | |
Cellular Component | chloroplast stroma | |
Cellular Component | cytoplasm | |
Cellular Component | thylakoid membrane | |
Molecular Function | mRNA binding | |
Molecular Function | single-stranded RNA binding | |
Biological Process | chloroplast mRNA processing | |
Biological Process | chloroplast organization | |
Biological Process | mRNA processing | |
Biological Process | positive regulation of translation |
Keywords
- Molecular function
- Biological process
Names & Taxonomy
Protein names
- Recommended namePentatricopeptide repeat-containing protein CRP1, chloroplastic
- Alternative names
Gene names
Organism names
- Organism
- Strain
- Taxonomic lineageEukaryota > Viridiplantae > Streptophyta > Embryophyta > Tracheophyta > Spermatophyta > Magnoliopsida > Liliopsida > Poales > Poaceae > PACMAD clade > Panicoideae > Andropogonodae > Andropogoneae > Tripsacinae > Zea
Accessions
- Primary accessionA0A1D6IEG9
- Secondary accessions
Proteomes
Genome annotation databases
Subcellular Location
Phenotypes & Variants
Disruption phenotype
Pale green leaf phenotype. Seedling lethality.
Variants
We now provide the "Disease & Variants" viewer in its own tab.
The viewer provides 3 variants from UniProt as well as other sources including ClinVar and dbSNP.
PTM/Processing
Features
Showing features for transit peptide, chain.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Transit peptide | 1-64 | Chloroplast | ||||
Sequence: MPASLLPPTFLPHHLRRLAPAGCTTSSVTSSSVSIPASRYDFEPLLAYLSSPSVSASLTSPSPP | ||||||
Chain | PRO_0000441906 | 65-668 | Pentatricopeptide repeat-containing protein CRP1, chloroplastic | |||
Sequence: ASVPAPEHRLAASYSAVPSHEWHALLRDLAASDASLPLAFALLPFLHRHRLCFPLDLLLSSLLHSLSVSGRLLPHSLLLSFPPSLSDPPSPLLLNSLLAASAAASRPAVALRLLSLLREHDFLPDLASYSHLLASLLNTRDPPDAALLERLLGDLRESRLEPDAPLFSDLISAFARAALPDAALELLASAQAIGLTPRSNAVTALISALGTAGRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVRIASLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAAELFEEMRESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMKADGLEVSILVLNSLINAFGEDRRVVEAFSVLQFMRENGLRPDVITYTTLMKALIRVEQFDKVPVIYEEMITSGCAPDRKARAMLRSGLKYIKHMRVA |
Proteomic databases
Expression
Gene expression databases
Interaction
Structure
Family & Domains
Features
Showing features for repeat.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Repeat | 154-188 | PPR 1 | ||||
Sequence: SPLLLNSLLAASAAASRPAVALRLLSLLREHDFLP | ||||||
Repeat | 189-226 | PPR 2 | ||||
Sequence: DLASYSHLLASLLNTRDPPDAALLERLLGDLRESRLEP | ||||||
Repeat | 227-261 | PPR 3 | ||||
Sequence: DAPLFSDLISAFARAALPDAALELLASAQAIGLTP | ||||||
Repeat | 262-297 | PPR 4 | ||||
Sequence: RSNAVTALISALGTAGRVAEAEALFLEFFLAGEIKP | ||||||
Repeat | 298-332 | PPR 5 | ||||
Sequence: RTRAYNALLKGYVRIASLKNAEQVLDEMSQCGVAP | ||||||
Repeat | 333-367 | PPR 6 | ||||
Sequence: DEATYSLLVDAYTRAGRWESARILLKEMEADGVKP | ||||||
Repeat | 368-402 | PPR 7 | ||||
Sequence: SSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRP | ||||||
Repeat | 403-437 | PPR 8 | ||||
Sequence: DRHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIEP | ||||||
Repeat | 438-472 | PPR 9 | ||||
Sequence: DVVTWNTLIDAHCKGGRHDRAAELFEEMRESNCPP | ||||||
Repeat | 473-507 | PPR 10 | ||||
Sequence: GTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVP | ||||||
Repeat | 508-542 | PPR 11 | ||||
Sequence: NIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKP | ||||||
Repeat | 543-577 | PPR 12 | ||||
Sequence: SPTMYHALVNAYAQRGLADHALNVVKAMKADGLEV | ||||||
Repeat | 578-612 | PPR 13 | ||||
Sequence: SILVLNSLINAFGEDRRVVEAFSVLQFMRENGLRP | ||||||
Repeat | 613-647 | PPR 14 | ||||
Sequence: DVITYTTLMKALIRVEQFDKVPVIYEEMITSGCAP |
Sequence similarities
Belongs to the PPR family. P subfamily.
Keywords
- Domain
Phylogenomic databases
Family and domain databases
Sequence
- Sequence statusComplete
- Sequence processingThe displayed sequence is further processed into a mature form.
- Length668
- Mass (Da)73,223
- Last updated2016-11-30 v1
- Checksum03967CE801134282
Computationally mapped potential isoform sequences
There is 1 potential isoform mapped to this entry
Entry | Entry name | Gene name | Length | ||
---|---|---|---|---|---|
A0A804QF05 | A0A804QF05_MAIZE | 732792 | 617 |
Features
Showing features for sequence conflict.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Sequence conflict | 98 | in Ref. 1; AAC25599 | ||||
Sequence: A → V | ||||||
Sequence conflict | 313 | in Ref. 1; AAC25599 | ||||
Sequence: A → G |
Keywords
- Technical term
Sequence databases
Nucleotide Sequence | Protein Sequence | Molecule Type | Status | |
---|---|---|---|---|
AF073522 EMBL· GenBank· DDBJ | AAC25599.1 EMBL· GenBank· DDBJ | mRNA | ||
CM007650 EMBL· GenBank· DDBJ | ONM58112.1 EMBL· GenBank· DDBJ | Genomic DNA |