A0A165R9Q4 · A0A165R9Q4_9POTV

Function

function

An RNA-dependent RNA polymerase that plays an essential role in the virus replication.
Has RNA-binding and proteolytic activities.
Has helicase activity. It may be involved in replication.
Indispensable for virus replication.
Involved in aphid transmission, cell-to-cell and systemis movement, encapsidation of the viral RNA and in the regulation of viral RNA amplification.
Mediates the cap-independent, EIF4E-dependent translation of viral genomic RNAs (By similarity).
Binds to the cap-binding site of host EIF4E and thus interferes with the host EIF4E-dependent mRNA export and translation (By similarity).
VPg-RNA directly binds EIF4E and is a template for transcription (By similarity).
Also forms trimeric complexes with EIF4E-EIF4G, which are templates for translation
Required for aphid transmission and also has proteolytic activity. Only cleaves a Gly-Gly dipeptide at its own C-terminus. Interacts with virions and aphid stylets. Acts as a suppressor of RNA-mediated gene silencing, also known as post-transcriptional gene silencing (PTGS), a mechanism of plant viral defense that limits the accumulation of viral RNAs. May have RNA-binding activity.

Catalytic activity

  • Hydrolyzes a Gly-|-Gly bond at its own C-terminus, commonly in the sequence -Tyr-Xaa-Val-Gly-|-Gly, in the processing of the potyviral polyprotein.
    EC:3.4.22.45 (UniProtKB | ENZYME | Rhea)
  • Hydrolyzes glutaminyl bonds, and activity is further restricted by preferences for the amino acids in P6 - P1' that vary with the species of potyvirus, e.g. Glu-Xaa-Xaa-Tyr-Xaa-Gln-|-(Ser or Gly) for the enzyme from tobacco etch virus. The natural substrate is the viral polyprotein, but other proteins and oligopeptides containing the appropriate consensus sequence are also cleaved.
    EC:3.4.22.44 (UniProtKB | ENZYME | Rhea)

Features

Showing features for active site.

TypeIDPosition(s)Description
Active site782For helper component proteinase activity
Active site855For helper component proteinase activity

GO annotations

AspectTerm
Cellular Componenthelical viral capsid
Cellular Componenthost cell cytoplasmic vesicle
Cellular Componenthost cell nucleus
Cellular Componentvesicle
Molecular FunctionATP binding
Molecular Functioncysteine-type endopeptidase activity
Molecular Functionhelicase activity
Molecular Functionhydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
Molecular FunctionRNA binding
Molecular FunctionRNA-dependent RNA polymerase activity
Molecular Functionstructural molecule activity
Biological ProcessDNA-templated transcription
Biological Processproteolysis
Biological Processviral RNA genome replication
Biological Processviral translational frameshifting

Keywords

Names & Taxonomy

Protein names

  • Recommended name
    Genome polyprotein

Organism names

  • Taxonomic identifier
  • Organism
  • Strain
    • Pungjeonglee1_2012
  • Taxonomic lineage
    Viruses > Riboviria > Orthornavirae > Pisuviricota > Stelpaviricetes > Patatavirales > Potyviridae > Potyvirus

Accessions

  • Primary accession
    A0A165R9Q4

Subcellular Location

Keywords

PTM/Processing

Keywords

Interaction

Subunit

Interacts with host eIF4E protein (via cap-binding region); this interaction mediates the translation of the VPg-viral RNA conjugates (By similarity).
Part of a complex that comprises VPg, RNA, host EIF4E and EIF4G; this interaction mediates the translation of the VPg-viral RNA conjugates

Family & Domains

Features

Showing features for domain, region, compositional bias.

TypeIDPosition(s)Description
Domain298-439Peptidase S30
Domain774-896Peptidase C6
Domain1367-1519Helicase ATP-binding
Domain1538-1697Helicase C-terminal
Domain2173-2391Peptidase C4
Domain2657-2781RdRp catalytic
Region2943-2987Disordered
Compositional bias2956-2978Polar residues

Sequence similarities

Belongs to the potyviridae genome polyprotein family.

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Length
    3,213
  • Mass (Da)
    366,011
  • Last updated
    2016-07-06 v1
  • Checksum
    98BF95BE2DD69CA1
MATIMFGDFAVQLKHSTVTEKRKRVVKTTKLVQEVRMDTVYEQVMESITVGCTERCAGLSAYTKSSLKRAIKEGDLSASGGCNYCGLRALVGEGRERVISVPRTVAQQKEVVVTKEVPHIYEEEYEVEVPHPASEMVLPTGGNVCGTAVQTKVAKNIVTKEMMARSEPSLKQVSRSLVLAGRKEIGNYDLAIKKMDEAMKHDPALQRRLFIQQQSTIKQLPKGAVQLRLCSYEQAKKRAELERKRKQEEEDFFSGKYEQQAYVGTTAINTTKPTGRSVGFRTIHWKPTPKQNKIKRVKKQYGKPTHVLEEILSLAAKTGKPVEFITNRTKKNFKINYVRKHGAVIPKFTLPHEEGKYVHQELQYANICEFLPYICMFAKYKAIRADDLTHGDSGLLFDERSSITAEHTTLPYFVVRGRENGKLVSAFEEFKEIGDIQHYSHTPEVQFFLGWKKVFDKMQPRVEAHECTIDFTNEQCGELAAAVSQSIFPVKKLSCKHCRRHIKDLSWEEYKQFLLTHMGCSEATWEDVRKAEGMEHVKKLIERSTAENLSLQTSMEIVRLTQNYKSTHMLQIQDINKALMKGSSVTQDELEQASKQLLAMTQWWKNHMTLTDEDALKVFRNKRSSKALLNPSLLCDNQLDKNGNFVWGERGKHSKRFFANYFEEVVPSEGYSKYVVRKNPNGQRELAIGSLIVPLDFERARMALKGKSITREPITMACISRQDGNFVYPCCCVTHDDGKAFYSELKSPTKRHLVIGTSGDPKYIDLPATETDRMYIAKEGYCYLNIFLAMLVNVNEDEAKDFTKMVRDVIVPKLGQWPTMFDVATAVYMLTVFHPETRNAELPRILVDHACQTMHVIDSFGSLTVGYHVLKAGTVNQLIQFASNDLQSEIKFYRVGGVAQQRMKCETALITSIFKPKRMIQILEEDPYILLMGLISPSILIHMYRMKHFEKGIEMWINKEHSVAKIFIIMEQLTKKIATNDLLLEQLDIIAGTSHKLMDVLEDCPQSAHSYKTVKDLLAMYIERKASNSQLVENGFVDMNDQLYVMHEKIYVDRLKQEWRALSWLEKSSITWQLKRFTPHTEQCLTKKVVEESSAYSRNFVSVCFMNAQSHLKNVRNTFFRKCDQAWTASVRGFVRFIISTLHKCYSDIVYLVNICLIFSLLIQMASVLQGIVSTAKKDKAFVHMHKRIEDEQAVVHLYEMCEKIENKHPSVEEFLSHVKKVRPELLPVAKSMTGQSEDVSAQAKTATQLQLEKIVAFMALLTMCIDNERSDAVFKILSKLKTFFGTMGEEVKVQSLDEIQNIDEDKKLTIDFDLETSKEPSSVSFDVKFEDWWHRQLQQNRVIPHYRSTGEFLEFSRETAAKVANLIATSSHTEFLIRGAVGSGKSTGLPHHLSKKGKVLLLEPTRPLAENVSKQLGLEPFYHNVTLRMRGLSKFGSSNIVVMTSGFAFHYYVNNPHQLSDFDFIIIDECHVQDSHTIAFNCALKEFEFSGKLLKVSATPPGRECEFTTQHPVKLKIEDHLSFQNFVQAQGTGSNADMLQHGNNLLVYVASYNEVDQLSRLLTEKHYKVTKVDGRTMQMGNVEITTTGTEGKPHFIVATNIIENGVTLDIDCVIDFGLKVVAVLDTDNRCVRYNKQSVSYGERIQRLGRVGRHKPGFALRVGHTEKGIEEVPEFIATEAAFLSFAYGLPVTTQSVSTNILSRCTVKQARVALNFELTPFFTINFIKYDGGMHPEIHRLLKPYKLRESEMMLHKLAIPHQFVGQWISVKEYNRQGIHLNCPETVKVPFYVNGIPDKLYESLWDTVCNYKCDAGFGSIRSVNASKISYTLSTDPTAIPRTLVILDHLLSEEMTKKSHFDTIGSSVTGYSFSLAGIADGFRKRYLRDYTQQNIAILQQAKAQLLEFDCTKVDINNLQNVEGVGILNAVQLQSKHEVSKFLQLKGKWDGKKFMNDAIVAIFALIGGGWMLWDYFTRMIREPVTTQGKKRQIQKLKFRDAFDRKVGREVYADDYTMEHTFGEAYTKKGKQKGSTRTKGMGRKSRNFTHMYGVEPENYSMIRFVDPLTGHTMDESTRVDIRLVQQEFGEIREEMIGADELDPQKVYHNPGIQAYFIGKNAEEALKVDLTPHVPTLLCQNSNAIAGFPEREGELRQTGLPQIVPKADVPRAKERVEVESKSVYKGLRDYSGISTLICQLTNSSDGHKETMFGVGYGSFIITNGHLFRRNNGMLTVKTWHGEFVIHNTTQLRIHFIQGKDAILIRMPKDFPPFAKRNFFRQPKREERVCMVGTNFQEKSLRATVSESSIILPEGKGSFWIHWITTQDGFCGLPLVSVNDGYIVGIHGLTSNDSEKNFFVPFTDGFETEYLNNADNLSWDKHWFWEPSKIAWGSLNLVEEQPKEEFKISKLVSDLFGNTVAVQSRKERWVLDAMEGNLVACGQADSALVTKHVVKGKCPYFAQYLSLHDEARQFFEPLMGAYQPSRLNKDAFKKDFFKYNKPVVLNEVDFNAFEKAVEGVITMMVDFEFAECLFVTDPDEIYGSLNMKAAVGAQYKGKKQDYFSGMDGFDKERLLYLSCERLFNGEKGIWNGSLKAELRPIEKVQANKTRTFTAAPIDTLLGAKVCVDDFNNQFYSFNLKCPWTVGMTKFYGGWDKLMRSLPDGWTYCHADGSQFDSSLTPLLLNAVLSIRCCFMEDWWVGREMLENLYAEIVYTPILAPDGTIFKKFRGNNSGQPSTVVDNTLMVVIAMYYSCCKQGWLEEDIERRLVFFANGDDIILAVRDEDVWLYDTLSASFAELGLNYNFDERTKKREELWFMSHQAMLIDGIYIPKLEPERIVSILEWDRSKEIMHRTEAICAAMIEAWGHTELLQEIRKFYLWLLSKDEFKELAASGKAPYIAETALRKLYTDVNTQQSELQRYLEVLDFSHIDGCCESVSLQSGKEAVENLDAGKDSKKDTSGKGDKPQNSQTGQGSKEQTKTGAVSKDVNVGSKGKEVPRLQKITKKMNLPTVGGKIILSLDHLLEYKPNQVDLFNTRATKTQFESWYSAVKVEYDLNDEQMGVIMNGFMVWCIDNGTSPDVNGVWVMMDGEEQVEYPLKPIVENAKPTLRQIMHHFSDAAEAYIEMRNSESPYMPRYGLLRNLRDRELARYAFDFYEVTSKTPNRAREAIAQMKAAALAGINSRLFGLDGNISTNSENTERHTARDVNQNMHTLLGMGPPQ

Features

Showing features for compositional bias.

TypeIDPosition(s)Description
Compositional bias2956-2978Polar residues

Keywords

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
KU240101
EMBL· GenBank· DDBJ
AMY62749.1
EMBL· GenBank· DDBJ
Genomic RNA

Similar Proteins

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