A0A126UXV7 · A0A126UXV7_9RHOB

Function

function

Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.

Caution

Lacks conserved residue(s) required for the propagation of feature annotation.

Catalytic activity

Cofactor

Mg2+ (UniProtKB | Rhea| CHEBI:18420 )

Note: Requires a divalent cation, most likely magnesium in vivo, as an electrophilic catalyst to aid phosphoryl group transfer. It is the chelate of the metal and the nucleotide that is the actual substrate.

Activity regulation

Activated by a monovalent cation that binds near, but not in, the active site. The most likely occupant of the site in vivo is potassium. Ion binding induces a conformational change that may alter substrate affinity.

Pathway

Carbohydrate metabolism; D-ribose degradation; D-ribose 5-phosphate from beta-D-ribopyranose: step 2/2.

Features

Showing features for binding site, active site.

Type
IDPosition(s)Description
Binding site10-12substrate
Binding site38-42substrate
Binding site136substrate
Binding site179ATP (UniProtKB | ChEBI)
Binding site205-210ATP (UniProtKB | ChEBI)
Binding site231K+ (UniProtKB | ChEBI)
Binding site233K+ (UniProtKB | ChEBI)
Binding site236-237ATP (UniProtKB | ChEBI)
Active site237Proton acceptor
Binding site237substrate
Binding site267K+ (UniProtKB | ChEBI)
Binding site270K+ (UniProtKB | ChEBI)
Binding site272K+ (UniProtKB | ChEBI)

GO annotations

AspectTerm
Cellular Componentcytoplasm
Molecular FunctionATP binding
Molecular Functionmetal ion binding
Molecular Functionribokinase activity
Biological ProcessD-ribose catabolic process

Keywords

Enzyme and pathway databases

Names & Taxonomy

Protein names

  • Recommended name
    Ribokinase
  • EC number
  • Short names
    RK

Gene names

    • Name
      rbsK
    • ORF names
      RC74_05935

Organism names

  • Taxonomic identifier
  • Strain
    • PAMC 20958
  • Taxonomic lineage
    Bacteria > Pseudomonadota > Alphaproteobacteria > Rhodobacterales > Roseobacteraceae > Falsihalocynthiibacter

Accessions

  • Primary accession
    A0A126UXV7

Proteomes

Subcellular Location

Keywords

Interaction

Subunit

Homodimer.

Protein-protein interaction databases

Family & Domains

Features

Showing features for domain.

TypeIDPosition(s)Description
Domain6-279Carbohydrate kinase PfkB

Sequence similarities

Belongs to the carbohydrate kinase PfkB family. Ribokinase subfamily.

Phylogenomic databases

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Length
    291
  • Mass (Da)
    29,711
  • Last updated
    2016-06-08 v1
  • MD5 Checksum
    269F2DB08FEC34F2CB97B0B160B2F589
MTIFNLGSINADHVYSVPHLPLPGETLAATGFSIGLGGKGTNQSVAAARAGSDVFHIGAVGPDGVWAREKLAELGVNVDGVSQIQTPTGHAIINVDANAENAIVLFPGANVSLSESEISRALEAGKAGDTLLLQNETSHQAFAAELAQKKGIRVVYSAAPFSIEAVRAVLPFVSMLAMNEGEAAQLCAALGTNIENLPVPETLVTLGSKGAQWHGNGSNLNVESFSVVPVDTTGAGDTFAGYFAAARDQGADVAQALKLASAAAAIKVTRAGAAEAIPARAEVDVFLSQRS

Keywords

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
CP014327
EMBL· GenBank· DDBJ
AML50880.1
EMBL· GenBank· DDBJ
Genomic DNA

Genome annotation databases

Similar Proteins

Disclaimer

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