A0A0V0SGW8 · A0A0V0SGW8_9BILA

  • Protein
    U6 snRNA-associated Sm-like protein LSm6
  • Gene
    Lsm6
  • Status
    UniProtKB unreviewed (TrEMBL)
  • Amino acids
  • Protein existence
    Inferred from homology
  • Annotation score
    2/5

Function

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.

GO annotations

all annotationsall molecular functionvirus receptor activitydna bindingrna bindingcytoskeletal motor activitycatalytic activitygtpase activitystructural molecule activitytransporter activitycytoskeletal protein bindinglipid bindingcyclase activityantioxidant activityoxidoreductase activitytransferase activityhydrolase activitylyase activityisomerase activityligase activityprotein tag activitycargo receptor activityhistone bindingprotein folding chaperonetranslation regulator activitynutrient reservoir activityreceptor ligand activitymolecular transducer activitymolecular adaptor activitytoxin activitycell adhesion mediator activitymolecular function regulator activityvirus coreceptor activitycatalytic activity, acting on a proteincatalytic activity, acting on dnacatalytic activity, acting on rnamolecular carrier activitytranscription regulator activitygeneral transcription initiation factor activitymolecular sensor activitymolecular sequestering activityatp-dependent activityother molecular functionall biological processmitotic cell cyclecytokinesiscytoplasmic translationimmune system processmuscle system processcirculatory system processrenal system processrespiratory system processcarbohydrate metabolic processgeneration of precursor metabolites and energydna replicationdna repairdna recombinationchromatin organizationdna-templated transcriptionregulation of dna-templated transcriptiontrna metabolic processprotein foldingprotein glycosylationamino acid metabolic processmodified amino acid metabolic processlipid metabolic processvitamin metabolic processsulfur compound metabolic processintracellular protein transportnucleocytoplasmic transportautophagyinflammatory responsemitochondrion organizationcytoskeleton organizationmicrotubule-based movementperoxisome organizationlysosome organizationchromosome segregationcell adhesionestablishment or maintenance of cell polarityprogrammed cell deathphotosynthesismrna metabolic processsnrna metabolic processvesicle-mediated transportreproductive processdigestive system processsignalingcell differentiationprotein catabolic processextracellular matrix organizationregulatory ncrna-mediated gene silencingtelomere organizationcell junction organizationwound healingribosome biogenesiscilium organizationanatomical structure developmentcell motilitynervous system processendocrine processprotein maturationtransmembrane transportnucleobase-containing small molecule metabolic processhepaticobiliary system processmembrane organizationprotein-containing complex assemblycell wall organization or biogenesisnitrogen cycle metabolic processprotein localization to plasma membranedefense response to other organismdetoxificationmeiotic nuclear divisionmitotic nuclear divisionmitochondrial gene expressioncarbohydrate derivative metabolic processother biological processall cellular componentnuclear chromosomeextracellular regionextracellular spacecell wallnucleusnuclear envelopenucleoplasmchromosomenucleolusmitochondrionlysosomeendosomevacuoleperoxisomeendoplasmic reticulumgolgi apparatuslipid dropletmicrotubule organizing centercytosolribosomecytoskeletonplasma membraneciliumplastidthylakoidexternal encapsulating structureextracellular matrixcytoplasmic vesicleorganelleother cellular component
Cell color indicative of number of GO terms
AspectTerm
Cellular Componentnucleolus
Cellular ComponentP-body
Cellular Componentsno(s)RNA-containing ribonucleoprotein complex
Cellular Componentspliceosomal complex
Cellular ComponentU4/U6 x U5 tri-snRNP complex
Cellular ComponentU6 snRNP
Molecular FunctionRNA binding
Biological Processmaturation of SSU-rRNA
Biological ProcessmRNA splicing, via spliceosome
Biological ProcesstRNA processing

Keywords

Names & Taxonomy

Protein names

  • Submitted names
    • U6 snRNA-associated Sm-like protein LSm6

Gene names

    • Name
      Lsm6
    • ORF names
      T07_12649

Organism names

  • Taxonomic identifier
  • Organism
  • Strain
    • ISS37
  • Taxonomic lineage
    Eukaryota > Metazoa > Ecdysozoa > Nematoda > Enoplea > Dorylaimia > Trichinellida > Trichinellidae > Trichinella

Accessions

  • Primary accession
    A0A0V0SGW8

Proteomes

Subcellular Location

Interaction

Protein-protein interaction databases

Family & Domains

Features

Showing features for region, domain.

TypeIDPosition(s)Description
Region1-37Disordered
Region213-232Disordered
Domain254-326Sm

Sequence similarities

Belongs to the snRNP Sm proteins family. SmF/LSm6 subfamily.

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Length
    327
  • Mass (Da)
    36,906
  • Last updated
    2016-03-16 v1
  • Checksum
    87292C15E01262DF
MSTRRRDRASENEQAHSNGGRTGADPEADPLASPGGSLQWVPVREITPSVYRGAYYCPPPAFSPEMNSVEWLQRLEDFFCVSGVPPSDHGMVARYLLSDSVRRVLYPAKQAKEISFEEFKKQLLGMYGPEESTGQLIQRFHALHQREGQTIEQYAQEVAEVGRRAGVSERDLVARFARGITSKQAYMAMRLQEPPTLAEARKLVSKIMRAEEDFHQSRQSHTSNPKPEKSEVAQSIEALIREICNKYQMSGRQTPSEFLKQLIGKPVMVKLNSGLDYRGILACLDGYLNVALEQTEEYANGQLKQKYGDAFIRGNNVLYISTQKRRA

Keywords

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
JYDL01000009
EMBL· GenBank· DDBJ
KRX26007.1
EMBL· GenBank· DDBJ
Genomic DNA

Similar Proteins

Disclaimer

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