A0A0S2DDF2 · A0A0S2DDF2_LYSEN
- ProteinSiroheme synthase
- GenecobA
- StatusUniProtKB unreviewed (TrEMBL)
- Organism
- Amino acids498 (go to sequence)
- Protein existenceInferred from homology
- Annotation score5/5
Function
function
Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD-dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme.
Catalytic activity
- siroheme + 2 H+ = sirohydrochlorin + Fe2+
Pathway
Cofactor biosynthesis; adenosylcobalamin biosynthesis; precorrin-2 from uroporphyrinogen III: step 1/1.
Cofactor biosynthesis; adenosylcobalamin biosynthesis; sirohydrochlorin from precorrin-2: step 1/1.
Porphyrin-containing compound metabolism; siroheme biosynthesis; precorrin-2 from uroporphyrinogen III: step 1/1.
Porphyrin-containing compound metabolism; siroheme biosynthesis; siroheme from sirohydrochlorin: step 1/1.
Porphyrin-containing compound metabolism; siroheme biosynthesis; sirohydrochlorin from precorrin-2: step 1/1.
Features
Showing features for binding site, active site.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Binding site | 43-44 | NAD+ (UniProtKB | ChEBI) | ||||
Sequence: AV | ||||||
Binding site | 64-65 | NAD+ (UniProtKB | ChEBI) | ||||
Sequence: PT | ||||||
Binding site | 248 | S-adenosyl-L-methionine (UniProtKB | ChEBI) | ||||
Sequence: P | ||||||
Active site | 271 | Proton acceptor | ||||
Sequence: D | ||||||
Active site | 293 | Proton donor | ||||
Sequence: K | ||||||
Binding site | 324-326 | S-adenosyl-L-methionine (UniProtKB | ChEBI) | ||||
Sequence: GGD | ||||||
Binding site | 329 | S-adenosyl-L-methionine (UniProtKB | ChEBI) | ||||
Sequence: V | ||||||
Binding site | 354-355 | S-adenosyl-L-methionine (UniProtKB | ChEBI) | ||||
Sequence: TA | ||||||
Binding site | 406 | S-adenosyl-L-methionine (UniProtKB | ChEBI) | ||||
Sequence: M | ||||||
Binding site | 435 | S-adenosyl-L-methionine (UniProtKB | ChEBI) | ||||
Sequence: G |
GO annotations
Aspect | Term | |
---|---|---|
Molecular Function | NAD binding | |
Molecular Function | precorrin-2 dehydrogenase activity | |
Molecular Function | sirohydrochlorin ferrochelatase activity | |
Molecular Function | uroporphyrin-III C-methyltransferase activity | |
Biological Process | cobalamin biosynthetic process | |
Biological Process | methylation | |
Biological Process | siroheme biosynthetic process |
Keywords
- Molecular function
- Biological process
- Ligand
Enzyme and pathway databases
Names & Taxonomy
Protein names
- Recommended nameSiroheme synthase
Including 3 domains:
- Recommended nameUroporphyrinogen-III C-methyltransferase
- EC number
- Short namesUrogen III methylase
- Alternative names
- Recommended namePrecorrin-2 dehydrogenase
- EC number
- Recommended nameSirohydrochlorin ferrochelatase
- EC number
Gene names
Organism names
- Organism
- Strain
- Taxonomic lineageBacteria > Pseudomonadota > Gammaproteobacteria > Lysobacterales > Lysobacteraceae > Lysobacter
Accessions
- Primary accessionA0A0S2DDF2
Proteomes
PTM/Processing
Features
Showing features for modified residue.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Modified residue | 149 | Phosphoserine | ||||
Sequence: S |
Keywords
- PTM
Interaction
Protein-protein interaction databases
Structure
Family & Domains
Features
Showing features for region, domain.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Region | 1-21 | Disordered | ||||
Sequence: MTRASSRSEHDNAPQAGERPG | ||||||
Region | 1-224 | Precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase | ||||
Sequence: MTRASSRSEHDNAPQAGERPGGGLFPLFADLRGRGVLVVGGGAVAQRKTAALLDAGATVRVGAPTLNPGLSAWAAEGRIEHLPGEFAPQWLDEAWLAIAATDDAAVNRAVAAAGEARRIWVNVVDDVEASGFHVPARVERGPVQIAISSGGGAPMLARHLREKLETELDESLGALAQLLNRERARIRRHYPDLGQRRRFFERVLAGAIPALLRDGRHDEAQRAF | ||||||
Domain | 140-165 | Siroheme synthase central | ||||
Sequence: RGPVQIAISSGGGAPMLARHLREKLE | ||||||
Domain | 171-228 | Sirohaem synthase dimerisation | ||||
Sequence: SLGALAQLLNRERARIRRHYPDLGQRRRFFERVLAGAIPALLRDGRHDEAQRAFGAAL | ||||||
Region | 239-498 | Uroporphyrinogen-III C-methyltransferase | ||||
Sequence: GSVVLVGAGPGDAGLMTLRGLRALNQADVILHDRLVSRDVLRLARRDAELIEVGKQAGNHHTTQERIHELMLEHARAGKRVVRLKGGDPFVFGRGGEELEVLAQAGIGFEVVPGITAALACAAYAGVPLTHRDHAQSLRLVTAHLKDSAGDLDWQALAQDKQTLAVYMGVAGLDVLRDKLIEHGRAASTPFALIENGSRPGQRVVTGTLADLAERAQGHRVQSPALLIVGEVAALAQRLHWFGPAPLTEPPADAALARAA | ||||||
Domain | 241-451 | Tetrapyrrole methylase | ||||
Sequence: VVLVGAGPGDAGLMTLRGLRALNQADVILHDRLVSRDVLRLARRDAELIEVGKQAGNHHTTQERIHELMLEHARAGKRVVRLKGGDPFVFGRGGEELEVLAQAGIGFEVVPGITAALACAAYAGVPLTHRDHAQSLRLVTAHLKDSAGDLDWQALAQDKQTLAVYMGVAGLDVLRDKLIEHGRAASTPFALIENGSRPGQRVVTGTLADLA |
Sequence similarities
Belongs to the precorrin methyltransferase family.
In the C-terminal section; belongs to the precorrin methyltransferase family.
In the N-terminal section; belongs to the precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase family.
Family and domain databases
Sequence
- Sequence statusComplete
- Length498
- Mass (Da)52,815
- Last updated2016-02-17 v1
- ChecksumFB0466EDDCAC2583
Sequence databases
Nucleotide Sequence | Protein Sequence | Molecule Type | Status | |
---|---|---|---|---|
CP013140 EMBL· GenBank· DDBJ | ALN56587.1 EMBL· GenBank· DDBJ | Genomic DNA |