A0A0S1VVQ8 · A0A0S1VVQ8_LETCA
- ProteinProtocadherin-d
- GenePcdh-d
- StatusUniProtKB unreviewed (TrEMBL)
- Amino acids1711 (go to sequence)
- Protein existenceEvidence at transcript level
- Annotation score2/5
Function
GO annotations
all annotations | all molecular function | virus receptor activity | dna binding | rna binding | cytoskeletal motor activity | catalytic activity | gtpase activity | structural molecule activity | transporter activity | cytoskeletal protein binding | lipid binding | cyclase activity | antioxidant activity | oxidoreductase activity | transferase activity | hydrolase activity | lyase activity | isomerase activity | ligase activity | protein tag activity | cargo receptor activity | histone binding | protein folding chaperone | translation regulator activity | nutrient reservoir activity | receptor ligand activity | molecular transducer activity | molecular adaptor activity | toxin activity | cell adhesion mediator activity | molecular function regulator activity | virus coreceptor activity | catalytic activity, acting on a protein | catalytic activity, acting on dna | catalytic activity, acting on rna | molecular carrier activity | transcription regulator activity | general transcription initiation factor activity | molecular sensor activity | molecular sequestering activity | atp-dependent activity | other molecular function | all biological process | mitotic cell cycle | cytokinesis | cytoplasmic translation | immune system process | muscle system process | circulatory system process | renal system process | respiratory system process | carbohydrate metabolic process | generation of precursor metabolites and energy | dna replication | dna repair | dna recombination | chromatin organization | dna-templated transcription | regulation of dna-templated transcription | trna metabolic process | protein folding | protein glycosylation | amino acid metabolic process | modified amino acid metabolic process | lipid metabolic process | vitamin metabolic process | sulfur compound metabolic process | intracellular protein transport | nucleocytoplasmic transport | autophagy | inflammatory response | mitochondrion organization | cytoskeleton organization | microtubule-based movement | peroxisome organization | lysosome organization | chromosome segregation | cell adhesion | establishment or maintenance of cell polarity | programmed cell death | photosynthesis | mrna metabolic process | snrna metabolic process | vesicle-mediated transport | reproductive process | digestive system process | signaling | cell differentiation | protein catabolic process | extracellular matrix organization | regulatory ncrna-mediated gene silencing | telomere organization | cell junction organization | wound healing | ribosome biogenesis | cilium organization | anatomical structure development | cell motility | nervous system process | endocrine process | protein maturation | transmembrane transport | nucleobase-containing small molecule metabolic process | hepaticobiliary system process | membrane organization | protein-containing complex assembly | cell wall organization or biogenesis | nitrogen cycle metabolic process | protein localization to plasma membrane | defense response to other organism | detoxification | meiotic nuclear division | mitotic nuclear division | mitochondrial gene expression | carbohydrate derivative metabolic process | other biological process | all cellular component | nuclear chromosome | extracellular region | extracellular space | cell wall | nucleus | nuclear envelope | nucleoplasm | chromosome | nucleolus | mitochondrion | lysosome | endosome | vacuole | peroxisome | endoplasmic reticulum | golgi apparatus | lipid droplet | microtubule organizing center | cytosol | ribosome | cytoskeleton | plasma membrane | cilium | plastid | thylakoid | external encapsulating structure | extracellular matrix | cytoplasmic vesicle | organelle | other cellular component | |||
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Aspect | Term | |
---|---|---|
Cellular Component | plasma membrane | |
Molecular Function | calcium ion binding | |
Biological Process | homophilic cell adhesion via plasma membrane adhesion molecules |
Keywords
- Biological process
- Ligand
Names & Taxonomy
Protein names
- Submitted names
Gene names
Organism names
- Taxonomic lineageEukaryota > Metazoa > Chordata > Craniata > Vertebrata > Cyclostomata > Hyperoartia > Petromyzontiformes > Petromyzontidae > Lethenteron
Accessions
- Primary accessionA0A0S1VVQ8
Subcellular Location
UniProt Annotation
GO Annotation
Features
Showing features for transmembrane.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Transmembrane | 1005-1027 | Helical | ||||
Sequence: FVIIAALGAVSFALLMAMVAIAL |
Keywords
- Cellular component
PTM/Processing
Features
Showing features for signal, chain.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Signal | 1-41 | |||||
Sequence: MMPHGSARPPSLRKPRRQRRRTPLSTAVALIALLALHAASG | ||||||
Chain | PRO_5006591221 | 42-1711 | ||||
Sequence: APQAPSPSQGSPDAQPGPAALVATTLRYSVPEESAPGTLVGRAAFDLGLPGPADLRSRNFRSLPSGNGTAYVTASEQSGELRLSGKRLDREEICRHGGGGGGGGGGGVGAGHFVGGGGAGGGISSMAGSGRAGGSDGDTDACVLSLELMLDSPPLLARVFVSVLDVNDHAPSFAESLVSLEVPESAAVGTRLPLPPASDPDSGSNGLQRYELVPDGDGGGGVDGERDDAFVLRLEAGGRNGLVVWLWGSTAGTGGSAGSGGAAAAAAGGGSGGPGGINGVGGGGGGGGGTPQSPELVLARALDRETRARHSFVLRAWDGGSPPRWGAARVTVTVTDVNDHVPRFERSEYLARVREGGPAGQGWPRGGPLVVLRARDPDEGANGEVRYSLGDHVSDDIRHLFAVDPTSGHVTLRAPLDYETATSYEFSVQARDLGVHSVPAHARVLVRVLDVNDNAPSIEASGARTDIMPLARSTGPGEPVSVSEGAPPGTLLALIRATDRDSGPNGQVTCTLADTAPPLSSSSSSPTTVMTAATMPMRLPFELRPSGDDWTLVTSGPLDRESLVGLATGSAAAATGAGTGGPYHHHQHHQQQLQQQQQQQPPLHTPALINLTVVATDGGDPPLSSSATFSVRLADVNDNAPRFSRPSYVFRVGENNIPGAYLGSVSASDPDEGANAAVSYSLVEATLDGMPAFTYVSVNPASGAVYALRSFDRGRRRRLLFGVAASDGGHPRLSATAAVTVLVVGDGAVDDGGDRAAPEFVSPDMGANRSAVVSARAGLPAGSLVLRLRARDPDGFDDVDGVDESVAGAGPGGGEGGAADVVGTSSGLRYAIAAGNEARWFRVDPRLGDVRAARDLPRRAARFRLLVTATDCGAGCDAASASAAAVSDSSAPAVTSTATVTVLVSDPEAGPDAGAGDAGGEGDHRIYEDGGGVGIGVGGVGGGGAGGRGSTGDDDGGRAFATSFVIIAALGAVSFALLMAMVAIALRCKHHKARPPADGHSKRERRRERRRERERRRERERDVGACEKPVTPPLGREPSVYRSLLPSELTMTRQADEATVPCKDVEEEGGGGGGGGGGGAGGGTGGPGGGERRASVYAVRTDGAACGSRQPDLLPVGPEQARTHKYLDPGALGARNPPRSEADRLSFKDSGHGDSDTGADSDADTARGSLSEADGPTHGPTHGPPCTHGPHGTHEKVGVRCTDECRVMGHSDSCWMPHDEHLHHHLHHQHHLHHRQQQQQQQQQQQQQQQQQHSHQPPDQHHHHLHQQQQQQSQQPQPEVPKTVGVRTRAPEEPAEKSGVERVPLAQSRGPFSTFGKSLGAFSSSSSSASSSASSSSSSSSSSSSSISSASAGKPPESLSLKDFKTSKQAPLSVGQPLATSKSSTKQPVSSPPSSLSSSSSSSQAGDQGGGMKASAYEAKHPRPPPGTGRGCAETEFTVPFSRDVDYDEADFGGGGGGGSGIRYERGAPLPPCTAPCCAGPDAGTTAKSPDNSLGATRPVLRPGPYPGPDPGIDADSGTPYPSEGTEPGHTRFDPNPNANPKAYRPNVSTNPGRLHPNSNTHCNPGANLSGPSTAFTNPNAAPNPHSNPVSNPQANANVSLCRPPGVARPQGGLMKPRPHPRPGHTKGLFKAGPRPQACCSPSPATGGPPRRLPTIPEPLHAETDETELG |
Structure
Family & Domains
Features
Showing features for region, domain, compositional bias.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Region | 1-24 | Disordered | ||||
Sequence: MMPHGSARPPSLRKPRRQRRRTPL | ||||||
Region | 39-59 | Disordered | ||||
Sequence: ASGAPQAPSPSQGSPDAQPGP | ||||||
Domain | 215-385 | Cadherin | ||||
Sequence: AESLVSLEVPESAAVGTRLPLPPASDPDSGSNGLQRYELVPDGDGGGGVDGERDDAFVLRLEAGGRNGLVVWLWGSTAGTGGSAGSGGAAAAAAGGGSGGPGGINGVGGGGGGGGGTPQSPELVLARALDRETRARHSFVLRAWDGGSPPRWGAARVTVTVTDVNDHVPRF | ||||||
Region | 231-265 | Disordered | ||||
Sequence: TRLPLPPASDPDSGSNGLQRYELVPDGDGGGGVDG | ||||||
Domain | 386-499 | Cadherin | ||||
Sequence: ERSEYLARVREGGPAGQGWPRGGPLVVLRARDPDEGANGEVRYSLGDHVSDDIRHLFAVDPTSGHVTLRAPLDYETATSYEFSVQARDLGVHSVPAHARVLVRVLDVNDNAPSI | ||||||
Domain | 515-684 | Cadherin | ||||
Sequence: TGPGEPVSVSEGAPPGTLLALIRATDRDSGPNGQVTCTLADTAPPLSSSSSSPTTVMTAATMPMRLPFELRPSGDDWTLVTSGPLDRESLVGLATGSAAAATGAGTGGPYHHHQHHQQQLQQQQQQQPPLHTPALINLTVVATDGGDPPLSSSATFSVRLADVNDNAPRF | ||||||
Region | 614-642 | Disordered | ||||
Sequence: AATGAGTGGPYHHHQHHQQQLQQQQQQQP | ||||||
Compositional bias | 626-642 | Polar residues | ||||
Sequence: HHQHHQQQLQQQQQQQP | ||||||
Domain | 685-801 | Cadherin | ||||
Sequence: SRPSYVFRVGENNIPGAYLGSVSASDPDEGANAAVSYSLVEATLDGMPAFTYVSVNPASGAVYALRSFDRGRRRRLLFGVAASDGGHPRLSATAAVTVLVVGDGAVDDGGDRAAPEF | ||||||
Domain | 821-954 | Cadherin | ||||
Sequence: PAGSLVLRLRARDPDGFDDVDGVDESVAGAGPGGGEGGAADVVGTSSGLRYAIAAGNEARWFRVDPRLGDVRAARDLPRRAARFRLLVTATDCGAGCDAASASAAAVSDSSAPAVTSTATVTVLVSDPEAGPDA | ||||||
Region | 1032-1134 | Disordered | ||||
Sequence: HKARPPADGHSKRERRRERRRERERRRERERDVGACEKPVTPPLGREPSVYRSLLPSELTMTRQADEATVPCKDVEEEGGGGGGGGGGGAGGGTGGPGGGERR | ||||||
Compositional bias | 1038-1067 | Basic and acidic residues | ||||
Sequence: ADGHSKRERRRERRRERERRRERERDVGAC | ||||||
Region | 1169-1237 | Disordered | ||||
Sequence: DPGALGARNPPRSEADRLSFKDSGHGDSDTGADSDADTARGSLSEADGPTHGPTHGPPCTHGPHGTHEK | ||||||
Compositional bias | 1182-1202 | Basic and acidic residues | ||||
Sequence: EADRLSFKDSGHGDSDTGADS | ||||||
Region | 1266-1711 | Disordered | ||||
Sequence: HLHHQHHLHHRQQQQQQQQQQQQQQQQQHSHQPPDQHHHHLHQQQQQQSQQPQPEVPKTVGVRTRAPEEPAEKSGVERVPLAQSRGPFSTFGKSLGAFSSSSSSASSSASSSSSSSSSSSSSISSASAGKPPESLSLKDFKTSKQAPLSVGQPLATSKSSTKQPVSSPPSSLSSSSSSSQAGDQGGGMKASAYEAKHPRPPPGTGRGCAETEFTVPFSRDVDYDEADFGGGGGGGSGIRYERGAPLPPCTAPCCAGPDAGTTAKSPDNSLGATRPVLRPGPYPGPDPGIDADSGTPYPSEGTEPGHTRFDPNPNANPKAYRPNVSTNPGRLHPNSNTHCNPGANLSGPSTAFTNPNAAPNPHSNPVSNPQANANVSLCRPPGVARPQGGLMKPRPHPRPGHTKGLFKAGPRPQACCSPSPATGGPPRRLPTIPEPLHAETDETELG | ||||||
Compositional bias | 1277-1296 | Polar residues | ||||
Sequence: QQQQQQQQQQQQQQQQQHSH | ||||||
Compositional bias | 1308-1322 | Polar residues | ||||
Sequence: QQQQQQSQQPQPEVP | ||||||
Compositional bias | 1352-1396 | Polar residues | ||||
Sequence: PFSTFGKSLGAFSSSSSSASSSASSSSSSSSSSSSSISSASAGKP | ||||||
Compositional bias | 1403-1450 | Polar residues | ||||
Sequence: KDFKTSKQAPLSVGQPLATSKSSTKQPVSSPPSSLSSSSSSSQAGDQG | ||||||
Compositional bias | 1583-1640 | Polar residues | ||||
Sequence: KAYRPNVSTNPGRLHPNSNTHCNPGANLSGPSTAFTNPNAAPNPHSNPVSNPQANANV |
Keywords
- Domain
Family and domain databases
Sequence
- Sequence statusComplete
- Length1,711
- Mass (Da)174,970
- Last updated2016-02-17 v1
- ChecksumABF2AFBA09B9565C
Features
Showing features for compositional bias.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Compositional bias | 626-642 | Polar residues | ||||
Sequence: HHQHHQQQLQQQQQQQP | ||||||
Compositional bias | 1038-1067 | Basic and acidic residues | ||||
Sequence: ADGHSKRERRRERRRERERRRERERDVGAC | ||||||
Compositional bias | 1182-1202 | Basic and acidic residues | ||||
Sequence: EADRLSFKDSGHGDSDTGADS | ||||||
Compositional bias | 1277-1296 | Polar residues | ||||
Sequence: QQQQQQQQQQQQQQQQQHSH | ||||||
Compositional bias | 1308-1322 | Polar residues | ||||
Sequence: QQQQQQSQQPQPEVP | ||||||
Compositional bias | 1352-1396 | Polar residues | ||||
Sequence: PFSTFGKSLGAFSSSSSSASSSASSSSSSSSSSSSSISSASAGKP | ||||||
Compositional bias | 1403-1450 | Polar residues | ||||
Sequence: KDFKTSKQAPLSVGQPLATSKSSTKQPVSSPPSSLSSSSSSSQAGDQG | ||||||
Compositional bias | 1583-1640 | Polar residues | ||||
Sequence: KAYRPNVSTNPGRLHPNSNTHCNPGANLSGPSTAFTNPNAAPNPHSNPVSNPQANANV |