A0A0R3CGN8 · A0A0R3CGN8_9BRAD

Function

function

A peripheral cell membrane enzyme that catalyzes the oxidative decarboxylation of pyruvate to form acetate and CO2. It channels electrons from the cytoplasm to the respiratory chain at the cell membrane via ubiquinone.

Caution

Lacks conserved residue(s) required for the propagation of feature annotation.
The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.

Catalytic activity

Cofactor

Protein has several cofactor binding sites:
FAD (UniProtKB | Rhea| CHEBI:57692 )

Note: Binds 1 FAD per subunit.
Mg2+ (UniProtKB | Rhea| CHEBI:18420 )

Note: Binds 1 Mg2+ ion per subunit.
thiamine diphosphate (UniProtKB | Rhea| CHEBI:58937 )

Note: Binds 1 thiamine pyrophosphate per subunit.

Activity regulation

The C-terminus inhibits activity; it has to move for the enzyme to be active. Activated by lipid-binding, which occurs via the C-terminus.

Features

Showing features for binding site, site.

Type
IDPosition(s)Description
Binding site51thiamine diphosphate (UniProtKB | ChEBI)
Binding site277-281FAD (UniProtKB | ChEBI)
Binding site295FAD (UniProtKB | ChEBI)
Binding site411-413thiamine diphosphate (UniProtKB | ChEBI)
Binding site438Mg2+ (UniProtKB | ChEBI)
Binding site438-440thiamine diphosphate (UniProtKB | ChEBI)
Binding site465Mg2+ (UniProtKB | ChEBI)
Binding site465-471thiamine diphosphate (UniProtKB | ChEBI)
Site470Moves into active site upon enzyme activation, plays a role in electron transfer

GO annotations

AspectTerm
Cellular Componentplasma membrane
Molecular Functionflavin adenine dinucleotide binding
Molecular Functionlipid binding
Molecular Functionmagnesium ion binding
Molecular Functionpyruvate dehydrogenase (quinone) activity
Molecular Functionthiamine pyrophosphate binding
Molecular Functionubiquinone binding
Biological Processpyruvate catabolic process

Keywords

Enzyme and pathway databases

Names & Taxonomy

Protein names

  • Recommended name
    Pyruvate dehydrogenase [ubiquinone]
  • EC number
  • Alternative names
    • Pyruvate oxidase
      (POX
      )
    • Pyruvate:ubiquinone-8 oxidoreductase

Gene names

    • Name
      poxB
    • ORF names
      AOQ72_19985

Organism names

  • Taxonomic identifier
  • Strain
    • BR3267
  • Taxonomic lineage
    Bacteria > Pseudomonadota > Alphaproteobacteria > Hyphomicrobiales > Nitrobacteraceae > Bradyrhizobium

Accessions

  • Primary accession
    A0A0R3CGN8

Proteomes

Subcellular Location

Cell membrane
; Peripheral membrane protein

Keywords

Interaction

Subunit

Homotetramer.

Protein-protein interaction databases

Family & Domains

Features

Showing features for domain, region.

Type
IDPosition(s)Description
Domain5-116Thiamine pyrophosphate enzyme N-terminal TPP-binding
Region186-337FAD-binding domain
Domain195-322Thiamine pyrophosphate enzyme central
Domain384-530Thiamine pyrophosphate enzyme TPP-binding
Region536-577Membrane-binding domain

Domain

Has 4 domains; the Pyr domain which binds the pyrimidine moiety of the thiamine pyrophosphate cofactor, the FAD-binding domain, the PP-binding domain which binds the pyrophosphate portion of thiamine pyrophosphate and the C-terminal membrane binding region. The C-terminus is held closely against the rest of the protein and covers the active site; during activation it unfolds from the rest of the protein and forms an amphipathic helix upon membrane binding, exposing the active site.

Sequence similarities

Belongs to the TPP enzyme family.

Phylogenomic databases

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Length
    578
  • Mass (Da)
    61,782
  • Last updated
    2016-01-20 v1
  • Checksum
    E5E387585098E291
MAINNVADLFVATLEQAGVKRIYGIVGDSLNALTEALRRRGTIEWIHVRHEEVAAFAAAGEAEMTGSLAVCAGSCGPGNLHLINGLFDAHRSRVPVLAIAAQIPTAEIGGGYFQETHPQNLFRECSHYCELVSDPSQLPFVLENAIRAAVGLRGVAVVAMPGDVAFRSPPKRALSTTRGLALAPPKVVPQPDELKALADLLNGAERITLFCGRGCAGAHAPLMQLAEALKSPIVHALGGKEHVEYDNPYDVGMTGFIGFSSGYAAMHACDALVMLGTDFPYKQFFPDDAKVAQIDIRPENLGRRCRIDLGLVGDVKLTIEALLPLLTAKTQRKHLDDAVAHYKRAREGLDSLARGTPGAKPIHPQYLAKVISDHASDDAVFTADVGTPTVWAARYLDMNGRRRLIGSFVHGSMANAMPQAIGAQAAQLGRQVISLSGDGGFTMLMGDLITLTQEKLPVKVVVFNNGVLGFVALEMKAAGFVDTNVDLENPDFAAMARAMGIFAKRVEDPGELPGAMKEMLAHNGPALLDVVTAKQELSMPPTITAEQVKGFSLWVLRAVMNGRGDEVLDLAKTNLLPR

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
LJYF01000026
EMBL· GenBank· DDBJ
KRP96682.1
EMBL· GenBank· DDBJ
Genomic DNA

Similar Proteins

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