A0A0F8L8Q5 · A0A0F8L8Q5_METMZ

Function

function

DNA-dependent RNA polymerase (RNAP) catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.

Catalytic activity

Cofactor

[3Fe-4S] cluster (UniProtKB | Rhea| CHEBI:21137 )

Note: Binds 1 [3Fe-4S] cluster.

Features

Showing features for binding site.

TypeIDPosition(s)Description
Binding site205[3Fe-4S] cluster (UniProtKB | ChEBI)
Binding site208[3Fe-4S] cluster (UniProtKB | ChEBI)
Binding site211[3Fe-4S] cluster (UniProtKB | ChEBI)

GO annotations

AspectTerm
Cellular Componentcytoplasm
Cellular ComponentDNA-directed RNA polymerase complex
Molecular Function3 iron, 4 sulfur cluster binding
Molecular FunctionDNA binding
Molecular FunctionDNA-directed 5'-3' RNA polymerase activity
Molecular Functionmetal ion binding
Molecular Functionprotein dimerization activity
Biological ProcessDNA-templated transcription

Keywords

Enzyme and pathway databases

Names & Taxonomy

Protein names

  • Recommended name
    DNA-directed RNA polymerase subunit Rpo3
  • EC number
  • Alternative names
    • DNA-directed RNA polymerase subunit D

Gene names

    • Name
      rpo3
    • Synonyms
      rpoD
    • ORF names
      DU33_04140
      , DU45_14665
      , DU56_02795
      , DU64_18925
      , DU66_15540
      , DU68_14360

Organism names

  • Taxonomic identifier
  • Strains
    • 3.F.T.1A.1
    • 3.F.T.1A.2
    • 3.F.T.1A.4
    • 3.H.M.1B.1
    • 3.H.M.1B.2
    • 3.H.M.1B.5
  • Taxonomic lineage
    Archaea > Euryarchaeota > Stenosarchaea group > Methanomicrobia > Methanosarcinales > Methanosarcinaceae > Methanosarcina

Accessions

  • Primary accession
    A0A0F8L8Q5

Proteomes

Subcellular Location

Keywords

Interaction

Subunit

Part of the RNA polymerase complex.

Family & Domains

Features

Showing features for domain.

TypeIDPosition(s)Description
Domain164-1934Fe-4S ferredoxin-type
Domain195-2254Fe-4S ferredoxin-type

Sequence similarities

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Length
    266
  • Mass (Da)
    28,924
  • Last updated
    2015-07-22 v1
  • MD5 Checksum
    3D9F07A4DEE97C0292B1ED543D459B3D
MTMEVDILELSDRSAKFVLSRVSMAFANGVRRAMIADVPTLAIEYVNLYDNTSVLYDEQLALRLSLIPLVTDIETYMPQAECEVCGGEGCPACEVSLTLSAEGPGTVYSRDLISSDPKIQPADPNIPIVELKKGQKLVLEAIAHMGYGRDSVKWQAGVACGYKNVPVITIENCDACGHCAAECPKGIIRVEEAGARIAEDDLIKCSLCRLCERVCDINAIKVDFYENAFVFTMESDGSYTAKDLTINAANVIKGKAEELLAILDQL

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
JJPI01000124
EMBL· GenBank· DDBJ
KKG51336.1
EMBL· GenBank· DDBJ
Genomic DNA
JJPK01000065
EMBL· GenBank· DDBJ
KKG61353.1
EMBL· GenBank· DDBJ
Genomic DNA
JJPJ01000044
EMBL· GenBank· DDBJ
KKG64005.1
EMBL· GenBank· DDBJ
Genomic DNA
JJPU01000203
EMBL· GenBank· DDBJ
KKG91476.1
EMBL· GenBank· DDBJ
Genomic DNA
JJPV01000126
EMBL· GenBank· DDBJ
KKG96423.1
EMBL· GenBank· DDBJ
Genomic DNA
JJPW01000013
EMBL· GenBank· DDBJ
KKH03509.1
EMBL· GenBank· DDBJ
Genomic DNA

Genome annotation databases

Similar Proteins

Disclaimer

Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. Our staff consists of biologists and biochemists that are not trained to give medical advice.
We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.
Help