A0A0D6T094 · A0A0D6T094_9PSED

  • Protein
    RecBCD enzyme subunit RecB
  • Gene
    recB
  • Status
    UniProtKB unreviewed (TrEMBL)
  • Amino acids
  • Protein existence
    Inferred from homology
  • Annotation score
    4/5

Function

function

A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit contributes ATPase, 3'-5' helicase, exonuclease activity and loads RecA onto ssDNA.

Miscellaneous

In the RecBCD complex, RecB has a slow 3'-5' helicase, an exonuclease activity and loads RecA onto ssDNA, RecD has a fast 5'-3' helicase activity, while RecC stimulates the ATPase and processivity of the RecB helicase and contributes to recognition of the Chi site.

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.

Catalytic activity

Cofactor

Mg2+ (UniProtKB | Rhea| CHEBI:18420 )

Note: Binds 1 Mg2+ ion per subunit.

Features

Showing features for binding site, active site.

Type
IDPosition(s)Description
Binding site18-25ATP (UniProtKB | ChEBI)
Binding site959Mg2+ (UniProtKB | ChEBI)
Binding site1074Mg2+ (UniProtKB | ChEBI)
Active site1087For nuclease activity
Binding site1087Mg2+ (UniProtKB | ChEBI)

GO annotations

AspectTerm
Cellular Componentcytosol
Cellular Componentexodeoxyribonuclease V complex
Molecular Function3'-5' DNA helicase activity
Molecular FunctionATP binding
Molecular FunctionATP hydrolysis activity
Molecular FunctionDNA binding
Molecular Functionexodeoxyribonuclease V activity
Molecular Functionisomerase activity
Molecular Functionmagnesium ion binding
Biological Processdouble-strand break repair via homologous recombination

Keywords

Enzyme and pathway databases

Names & Taxonomy

Protein names

  • Recommended name
    RecBCD enzyme subunit RecB
  • EC number
  • Alternative names
    • DNA 3'-5' helicase subunit RecB
    • Exonuclease V subunit RecB
      (ExoV subunit RecB
      )
    • Helicase/nuclease RecBCD subunit RecB

Gene names

    • Name
      recB
    • ORF names
      SZ55_0722

Organism names

  • Taxonomic identifier
  • Organism
  • Strain
    • FeS53a
  • Taxonomic lineage
    Bacteria > Pseudomonadota > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas

Accessions

  • Primary accession
    A0A0D6T094

Proteomes

Subcellular Location

Interaction

Subunit

Heterotrimer of RecB, RecC and RecD. All subunits contribute to DNA-binding. Interacts with RecA.

Family & Domains

Features

Showing features for domain, region.

Type
IDPosition(s)Description
Domain1-441UvrD-like helicase ATP-binding
Region1-862DNA-binding and helicase activity, interacts with RecC
Domain456-732UvrD-like helicase C-terminal
Region910-1179Nuclease activity, interacts with RecD and RecA

Domain

The C-terminal domain has nuclease activity and interacts with RecD. It interacts with RecA, facilitating its loading onto ssDNA.
The N-terminal DNA-binding domain is a ssDNA-dependent ATPase and has ATP-dependent 3'-5' helicase function. This domain interacts with RecC.

Sequence similarities

Belongs to the helicase family. UvrD subfamily.

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Length
    1,179
  • Mass (Da)
    129,218
  • Last updated
    2015-05-27 v1
  • Checksum
    8736DB9B61EB8210
MSLDLLDSPFDGRSLIEASAGTGKTWTLTALYARLLLERQLGVGQILVVTYTTAATAELRERIRARLAALLAMYEGAPAPDPVLAGLHARYPGEDAHRRLLLAVHGFDEAAIFTIHGFCQRALQDAAFEAGGDFDSELAADDRDVLDALLADLWRAELAAAEPAWARFLAQKRLTPASLRQRLRGHLGKPYLRIEPRDAAPGDLAPACDAWEHARSLWLRDAASCLAELAAFDGLNKRSYDAAKFALWHSELDAYFADPAALFAPPAGLEKLAREALAKGCKKGFDLPEYPLCSALQGLVDALEAAKPAGEARLIALQVRLLDTLNRELPQRKAAQRLLAFDDLLNRLDEALQGEAGDALAAALRERYPVALIDEFQDTDPVQYAIFRRVYPGGEAGGDLCFVGDPKQAIYAFRGADLATYLKARDEAARQYSLATNHRSVPRLIAALNRVFDRPRPFAEPGLDYPPVGASDKPRPQLVLPEGGAPLELVWLGDEPLGKGEAGRAVAIDTARRIAALLAASAAGQAYFEADGVRTPLRGGDFAVLVASHRQAGDVAAELATRGVPSVRRGRDSVWHSEEAAELAAVLAAYAEPGREGVLRYALSTRLLGRDAQALARCQDDEHAWDEERERAERYHQLWQQHGFMRAFRAWLDEQAVAERLIALPDGERRLTNLLHLAELLQAESLLRPGLEPLLAWFIAQCQAESHGDDALLRLESDAERVQIVTVHTSKGLEYPLVFCPYLWDGALLRRDEDITCHAEDGTPLLDLGGPELEAHRERARRERFAERLRLAYVALTRPRDRLWLHWGPVAVPKPKKDGGLPDDGLHTSALAWLLHGRTLPGDAPLDELAGHLAALEGPGLRKELEALAADSAGDIAVVPLREAEASAQGEHRAPPPTALAQLQRTLHSAWRVGSFSGLAAGMHMEAPDRDAFFVPPATDPGSGFHAFPRGARAGTCLHAILEDWVRGEGELATLVDTHLKGHGLPLEWAETATLHLRQVLDTDLDGAGLTLAGLDPARRLPELGFTFPVRQLDLHGLRAVLADPAHGLPAPMRAAAERLEFDTLNGFMKGFIDLTFEHQGRWYIADYKSNWLGPDASYYGGERLEQAIAAEHYHLQYLIYLVALRRFLRQRLDGFGPDGLGGAYYLFLRGMPDAGVYFHRPDDALLDALDRLFEEGPP

Keywords

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
JYFT01000010
EMBL· GenBank· DDBJ
KIV74281.1
EMBL· GenBank· DDBJ
Genomic DNA

Genome annotation databases

Similar Proteins

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