A0A098M357 · A0A098M357_9BACL

  • Protein
    ATP-dependent RNA helicase DbpA
  • Gene
    dbpA
  • Status
    UniProtKB unreviewed (TrEMBL)
  • Amino acids
  • Protein existence
    Inferred from homology
  • Annotation score
    3/5

Function

function

DEAD-box RNA helicase involved in the assembly of the 50S ribosomal subunit. Has an RNA-dependent ATPase activity, which is specific for 23S rRNA, and a 3' to 5' RNA helicase activity that uses the energy of ATP hydrolysis to destabilize and unwind short rRNA duplexes.

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.

Catalytic activity

GO annotations

all annotationsall molecular functionvirus receptor activitydna bindingrna bindingcytoskeletal motor activitycatalytic activitygtpase activitystructural molecule activitytransporter activitycytoskeletal protein bindinglipid bindingcyclase activityantioxidant activityoxidoreductase activitytransferase activityhydrolase activitylyase activityisomerase activityligase activityprotein tag activitycargo receptor activityhistone bindingprotein folding chaperonetranslation regulator activitynutrient reservoir activityreceptor ligand activitymolecular transducer activitymolecular adaptor activitytoxin activitycell adhesion mediator activitymolecular function regulator activityvirus coreceptor activitycatalytic activity, acting on a proteincatalytic activity, acting on dnacatalytic activity, acting on rnamolecular carrier activitytranscription regulator activitygeneral transcription initiation factor activitymolecular sensor activitymolecular sequestering activityatp-dependent activityother molecular functionall biological processmitotic cell cyclecytokinesiscytoplasmic translationimmune system processmuscle system processcirculatory system processrenal system processrespiratory system processcarbohydrate metabolic processgeneration of precursor metabolites and energydna replicationdna repairdna recombinationchromatin organizationdna-templated transcriptionregulation of dna-templated transcriptiontrna metabolic processprotein foldingprotein glycosylationamino acid metabolic processmodified amino acid metabolic processlipid metabolic processvitamin metabolic processsulfur compound metabolic processintracellular protein transportnucleocytoplasmic transportautophagyinflammatory responsemitochondrion organizationcytoskeleton organizationmicrotubule-based movementperoxisome organizationlysosome organizationchromosome segregationcell adhesionestablishment or maintenance of cell polarityprogrammed cell deathphotosynthesismrna metabolic processsnrna metabolic processvesicle-mediated transportreproductive processdigestive system processsignalingcell differentiationprotein catabolic processextracellular matrix organizationregulatory ncrna-mediated gene silencingtelomere organizationcell junction organizationwound healingribosome biogenesiscilium organizationanatomical structure developmentcell motilitynervous system processendocrine processprotein maturationtransmembrane transportnucleobase-containing small molecule metabolic processhepaticobiliary system processmembrane organizationprotein-containing complex assemblycell wall organization or biogenesisnitrogen cycle metabolic processprotein localization to plasma membranedefense response to other organismdetoxificationmeiotic nuclear divisionmitotic nuclear divisionmitochondrial gene expressioncarbohydrate derivative metabolic processother biological processall cellular componentnuclear chromosomeextracellular regionextracellular spacecell wallnucleusnuclear envelopenucleoplasmchromosomenucleolusmitochondrionlysosomeendosomevacuoleperoxisomeendoplasmic reticulumgolgi apparatuslipid dropletmicrotubule organizing centercytosolribosomecytoskeletonplasma membraneciliumplastidthylakoidexternal encapsulating structureextracellular matrixcytoplasmic vesicleorganelleother cellular component
Cell color indicative of number of GO terms
AspectTerm
Cellular Componentcytosol
Cellular Componentribosome
Molecular Function3'-5' RNA helicase activity
Molecular FunctionATP binding
Molecular FunctionATP hydrolysis activity
Molecular FunctionRNA strand annealing activity
Biological Processresponse to cold
Biological Processribosomal large subunit assembly

Keywords

Enzyme and pathway databases

Names & Taxonomy

Protein names

  • Recommended name
    ATP-dependent RNA helicase DbpA
  • EC number

Gene names

    • Name
      dbpA
    • ORF names
      PWYN_16910

Organism names

  • Taxonomic identifier
  • Organism
  • Strain
    • DSM 18334
  • Taxonomic lineage
    Bacteria > Bacillota > Bacilli > Bacillales > Paenibacillaceae > Paenibacillus

Accessions

  • Primary accession
    A0A098M357

Proteomes

Subcellular Location

Keywords

Interaction

Protein-protein interaction databases

Family & Domains

Features

Showing features for domain, motif, region.

Type
IDPosition(s)Description
Domain4-32DEAD-box RNA helicase Q
Motif4-32Q motif
Domain35-205Helicase ATP-binding
Domain231-376Helicase C-terminal
Region406-481Involved in 23S rRNA binding

Domain

Contains an N-terminal domain that binds non-specifically to RNA and a C-terminal domain that binds specifically and tightly to hairpin 92 of 23S rRNA.

Sequence similarities

Belongs to the DEAD box helicase family. DbpA subfamily.

Phylogenomic databases

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Length
    481
  • Mass (Da)
    53,869
  • Last updated
    2015-01-07 v1
  • MD5 Checksum
    5BA7BA1C8F0FD5FD94E1C196DF329CE0
MSEIQFKDYELSEEIVKALDVLKYEKPTEVQSRVIPVALQEEDLIVKSQTGSGKTAAFGIPICELVDWAENKPQALILTPTRELAAQVKDDITNIGRFKRVKAVALFGKQPFAPQKAELTQKTHVVVGTPGRVSDHIERGTIHLNRIKYLVIDEADEMLNMGFIEQVEAIIKKLPKDHVTMLFSATLPEAVKNLCRKYMSSPLDIEINSEEITTAKIEHALIEVKQPAKFPLLTDIITVENPDSCIIFCRTQDQVDALFRGLADLQYPCDKIHGGMMQDERFEVMNAFKRGQFRYLIATDVAARGIDIESITHVINYDIPLEKESYVHRIGRTGRAGKTGKAITFATPNEHKWVKEIEGFIGFSIPVMKAPSSDAVAYAKEAFEQKINIQQVRKKDKSESLNKEIMKLYFNGGKKKKLRAVDFVGTIAKLEGITAEDIGIITIQDNVSYVDILNGKGSLVLEAMKTTTIKGKLLKVHIANK

Keywords

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
JQCR01000003
EMBL· GenBank· DDBJ
KGE16421.1
EMBL· GenBank· DDBJ
Genomic DNA

Similar Proteins

Disclaimer

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