S5PY73 · S5PY73_OSTTA

  • Protein
    Cytochrome b559 subunit beta
  • Gene
    psbF
  • Status
    UniProtKB unreviewed (TrEMBL)
  • Amino acids
  • Protein existence
    Inferred from homology
  • Annotation score
    3/5

Function

function

This b-type cytochrome is tightly associated with the reaction center of photosystem II (PSII). PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H2O, generating O2 and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation.

Cofactor

heme b (UniProtKB | Rhea| CHEBI:60344 )

Note: With its partner (PsbE) binds heme. PSII binds additional chlorophylls, carotenoids and specific lipids.

Features

Showing features for binding site.

1385101520253035
MSVKTYPIFTFRWLAVHALAVPTVFFLGSITAMQFIQR
TypeIDPosition(s)Description
Binding site17Fe (UniProtKB | ChEBI) of heme (UniProtKB | ChEBI); ligand shared with alpha subunit; axial binding residue

GO annotations

all annotationsall molecular functionnucleotide bindingmolecular_functionnucleic acid bindingdna bindingchromatin bindingdna-binding transcription factor activityrna bindingcytoskeletal motor activitycatalytic activitynuclease activitysignaling receptor bindingstructural molecule activitytransporter activitybindingprotein bindingtranslation factor activity, rna bindinglipid bindingkinase activitytransferase activityhydrolase activityoxygen bindingenzyme regulator activitycarbohydrate bindingsignaling receptor activitytranslation regulator activitytranscription regulator activityother molecular functionall biological processcarbohydrate metabolic processgeneration of precursor metabolites and energynucleobase-containing compound metabolic processdna metabolic processtranslationlipid metabolic processtransportresponse to stresscell cyclecell communicationsignal transductioncell-cell signalingmulticellular organism developmentcircadian rhythmbiological_processmetabolic processcatabolic processbiosynthetic processresponse to light stimulusresponse to external stimulustropismresponse to biotic stimulusresponse to abiotic stimulusresponse to endogenous stimulusembryo developmentpost-embryonic developmentfruit ripeningabscissionpollinationflower developmentcellular processprogrammed cell deathphotosynthesiscellular component organizationcell growthprotein metabolic processcellular homeostasissecondary metabolic processreproductive processcell differentiationprotein modification processgrowthepigenetic regulation of gene expressionresponse to chemicalanatomical structure developmentregulation of molecular functionother biological processall cellular componentcellular_componentextracellular regioncell wallintracellular anatomical structurenucleusnuclear envelopenucleoplasmnucleoluscytoplasmmitochondrionlysosomeendosomevacuoleperoxisomeendoplasmic reticulumgolgi apparatuscytosolribosomecytoskeletonplasma membranechloroplastplastidthylakoidmembraneexternal encapsulating structureother cellular component
Cell color indicative of number of GO terms
AspectTerm
Cellular Componentchloroplast thylakoid membrane
Cellular Componentphotosystem II reaction center
Molecular Functionelectron transfer activity
Molecular Functionheme binding
Molecular Functioniron ion binding
Biological Processphotosynthetic electron transport chain

Keywords

Names & Taxonomy

Protein names

  • Recommended name
    Cytochrome b559 subunit beta
  • Alternative names
    • PSII reaction center subunit VI

Gene names

    • Name
      psbF
    • ORF names
      OtCpg00150

Encoded on

  • Chloroplast

Organism names

  • Taxonomic identifier
  • Organism
  • Strains
    • RCC1108
    • RCC1110
    • RCC1112
    • RCC1114
    • RCC1115
  • Taxonomic lineage
    Eukaryota > Viridiplantae > Chlorophyta > Mamiellophyceae > Mamiellales > Bathycoccaceae > Ostreococcus

Accessions

  • Primary accession
    S5PY73

Subcellular Location

Membrane
; Single-pass membrane protein
Plastid, chloroplast thylakoid membrane
; Single-pass membrane protein

Features

Showing features for transmembrane.

TypeIDPosition(s)Description
Transmembrane12-36Helical

Keywords

Interaction

Subunit

Heterodimer of an alpha subunit and a beta subunit. PSII is composed of 1 copy each of membrane proteins PsbA, PsbB, PsbC, PsbD, PsbE, PsbF, PsbH, PsbI, PsbJ, PsbK, PsbL, PsbM, PsbT, PsbX, PsbY, PsbZ, Psb30/Ycf12, at least 3 peripheral proteins of the oxygen-evolving complex and a large number of cofactors. It forms dimeric complexes.

Family & Domains

Features

Showing features for domain.

TypeIDPosition(s)Description
Domain5-28Photosystem II cytochrome b559 N-terminal

Sequence similarities

Belongs to the PsbE/PsbF family.

Keywords

Phylogenomic databases

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Length
    38
  • Mass (Da)
    4,389
  • Last updated
    2013-10-16 v1
  • Checksum
    CCBB47CFBFA23576
MSVKTYPIFTFRWLAVHALAVPTVFFLGSITAMQFIQR

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
KC990831
EMBL· GenBank· DDBJ
AGR88189.1
EMBL· GenBank· DDBJ
Genomic DNA
KF285522
EMBL· GenBank· DDBJ
AGW30491.1
EMBL· GenBank· DDBJ
Genomic DNA
KF285523
EMBL· GenBank· DDBJ
AGW30552.1
EMBL· GenBank· DDBJ
Genomic DNA
KF285524
EMBL· GenBank· DDBJ
AGW30613.1
EMBL· GenBank· DDBJ
Genomic DNA
KF285525
EMBL· GenBank· DDBJ
AGW30674.1
EMBL· GenBank· DDBJ
Genomic DNA
KF285526
EMBL· GenBank· DDBJ
AGW30735.1
EMBL· GenBank· DDBJ
Genomic DNA
KF285527
EMBL· GenBank· DDBJ
AGW30797.1
EMBL· GenBank· DDBJ
Genomic DNA
KF285528
EMBL· GenBank· DDBJ
AGW30859.1
EMBL· GenBank· DDBJ
Genomic DNA
KF285529
EMBL· GenBank· DDBJ
AGW30920.1
EMBL· GenBank· DDBJ
Genomic DNA
KF285530
EMBL· GenBank· DDBJ
AGW30981.1
EMBL· GenBank· DDBJ
Genomic DNA
KF285531
EMBL· GenBank· DDBJ
AGW31042.1
EMBL· GenBank· DDBJ
Genomic DNA
KF285532
EMBL· GenBank· DDBJ
AGW31103.1
EMBL· GenBank· DDBJ
Genomic DNA
KF285533
EMBL· GenBank· DDBJ
AGW31164.1
EMBL· GenBank· DDBJ
Genomic DNA

Genome annotation databases

Similar Proteins

Disclaimer

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