Q6BTT1 · YTH1_DEBHA
- ProteinmRNA 3'-end-processing protein YTH1
- GeneYTH1
- StatusUniProtKB reviewed (Swiss-Prot)
- Amino acids223 (go to sequence)
- Protein existenceInferred from homology
- Annotation score2/5
Function
function
Component of the cleavage factor I (CF I) involved in pre-mRNA 3'-end processing.
GO annotations
all annotations | all molecular function | virus receptor activity | dna binding | rna binding | cytoskeletal motor activity | catalytic activity | gtpase activity | structural molecule activity | transporter activity | cytoskeletal protein binding | lipid binding | cyclase activity | antioxidant activity | oxidoreductase activity | transferase activity | hydrolase activity | lyase activity | isomerase activity | ligase activity | protein tag activity | cargo receptor activity | histone binding | protein folding chaperone | translation regulator activity | nutrient reservoir activity | receptor ligand activity | molecular transducer activity | molecular adaptor activity | toxin activity | cell adhesion mediator activity | molecular function regulator activity | virus coreceptor activity | catalytic activity, acting on a protein | catalytic activity, acting on dna | catalytic activity, acting on rna | molecular carrier activity | transcription regulator activity | general transcription initiation factor activity | molecular sensor activity | molecular sequestering activity | atp-dependent activity | other molecular function | all biological process | mitotic cell cycle | cytokinesis | cytoplasmic translation | immune system process | muscle system process | circulatory system process | renal system process | respiratory system process | carbohydrate metabolic process | generation of precursor metabolites and energy | dna replication | dna repair | dna recombination | chromatin organization | dna-templated transcription | regulation of dna-templated transcription | trna metabolic process | protein folding | protein glycosylation | amino acid metabolic process | modified amino acid metabolic process | lipid metabolic process | vitamin metabolic process | sulfur compound metabolic process | intracellular protein transport | nucleocytoplasmic transport | autophagy | inflammatory response | mitochondrion organization | cytoskeleton organization | microtubule-based movement | peroxisome organization | lysosome organization | chromosome segregation | cell adhesion | establishment or maintenance of cell polarity | programmed cell death | photosynthesis | mrna metabolic process | snrna metabolic process | vesicle-mediated transport | reproductive process | digestive system process | signaling | cell differentiation | protein catabolic process | extracellular matrix organization | regulatory ncrna-mediated gene silencing | telomere organization | cell junction organization | wound healing | ribosome biogenesis | cilium organization | anatomical structure development | cell motility | nervous system process | endocrine process | protein maturation | transmembrane transport | nucleobase-containing small molecule metabolic process | hepaticobiliary system process | membrane organization | protein-containing complex assembly | cell wall organization or biogenesis | nitrogen cycle metabolic process | protein localization to plasma membrane | defense response to other organism | detoxification | meiotic nuclear division | mitotic nuclear division | mitochondrial gene expression | carbohydrate derivative metabolic process | other biological process | all cellular component | nuclear chromosome | extracellular region | extracellular space | cell wall | nucleus | nuclear envelope | nucleoplasm | chromosome | nucleolus | mitochondrion | lysosome | endosome | vacuole | peroxisome | endoplasmic reticulum | golgi apparatus | lipid droplet | microtubule organizing center | cytosol | ribosome | cytoskeleton | plasma membrane | cilium | plastid | thylakoid | external encapsulating structure | extracellular matrix | cytoplasmic vesicle | organelle | other cellular component | |||
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Aspect | Term | |
---|---|---|
Cellular Component | nucleus | |
Molecular Function | metal ion binding | |
Molecular Function | RNA binding | |
Biological Process | mRNA processing |
Keywords
- Molecular function
- Biological process
- Ligand
Names & Taxonomy
Protein names
- Recommended namemRNA 3'-end-processing protein YTH1
Gene names
Organism names
- Strain
- Taxonomic lineageEukaryota > Fungi > Dikarya > Ascomycota > Saccharomycotina > Saccharomycetes > Saccharomycetales > Debaryomycetaceae > Debaryomyces
Accessions
- Primary accessionQ6BTT1
Proteomes
Organism-specific databases
Subcellular Location
PTM/Processing
Features
Showing features for chain.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Chain | PRO_0000238537 | 1-223 | mRNA 3'-end-processing protein YTH1 | |||
Sequence: MLQLNQVIHPDTRNKRFKFEPFLLKEYNFGLDPDRPVCQFYNPSNPNNSCPNGSLCPHKHVSSMYSNKIVCKHWLRGLCKKNDHCEFLHEYNLRKMPECLFYSKNGFCTQTPECLYLHVDPQSKIPPCSSYEKGFCPDGPKCANRHIRKIMCPLWLTGFCPKGAECDYTHPRFEAIIDRLRIKPDEDAVEEKEKVANGSDKEDQNMADATSNGNTEEKDESGP |
Interaction
Protein-protein interaction databases
Structure
Family & Domains
Features
Showing features for zinc finger, compositional bias, region.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Zinc finger | 32-63 | C3H1-type 1 | ||||
Sequence: DPDRPVCQFYNPSNPNNSCPNGSLCPHKHVSS | ||||||
Zinc finger | 65-92 | C3H1-type 2 | ||||
Sequence: YSNKIVCKHWLRGLCKKNDHCEFLHEYN | ||||||
Zinc finger | 93-121 | C3H1-type 3 | ||||
Sequence: LRKMPECLFYSKNGFCTQTPECLYLHVDP | ||||||
Zinc finger | 122-149 | C3H1-type 4 | ||||
Sequence: QSKIPPCSSYEKGFCPDGPKCANRHIRK | ||||||
Zinc finger | 151-173 | C3H1-type 5 | ||||
Sequence: MCPLWLTGFCPKGAECDYTHPRF | ||||||
Compositional bias | 184-201 | Basic and acidic residues | ||||
Sequence: PDEDAVEEKEKVANGSDK | ||||||
Region | 184-223 | Disordered | ||||
Sequence: PDEDAVEEKEKVANGSDKEDQNMADATSNGNTEEKDESGP |
Sequence similarities
Belongs to the CPSF4/YTH1 family.
Keywords
- Domain
Phylogenomic databases
Family and domain databases
Sequence
- Sequence statusComplete
- Length223
- Mass (Da)25,709
- Last updated2008-12-16 v2
- Checksum0B668AC5D4EC15C6
Features
Showing features for compositional bias.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Compositional bias | 184-201 | Basic and acidic residues | ||||
Sequence: PDEDAVEEKEKVANGSDK |
Keywords
- Technical term
Sequence databases
Nucleotide Sequence | Protein Sequence | Molecule Type | Status | |
---|---|---|---|---|
CR382135 EMBL· GenBank· DDBJ | CAG86470.2 EMBL· GenBank· DDBJ | Genomic DNA |