UniProtKB - P21531 (RL3_RAT)
Protein
60S ribosomal protein L3
Gene
Rpl3
Organism
Rattus norvegicus (Rat)
Status
Functioni
The L3 protein is a component of the large subunit of cytoplasmic ribosomes.By similarity
GO - Molecular functioni
- 5S rRNA binding Source: RGD
- RNA binding Source: GO_Central
- structural constituent of ribosome Source: GO_Central
GO - Biological processi
- cellular response to interleukin-4 Source: RGD
- ribosomal large subunit assembly Source: GO_Central
- translation Source: InterPro
Keywordsi
Molecular function | Ribonucleoprotein, Ribosomal protein |
Enzyme and pathway databases
Reactomei | R-RNO-156827, L13a-mediated translational silencing of Ceruloplasmin expression R-RNO-1799339, SRP-dependent cotranslational protein targeting to membrane R-RNO-6791226, Major pathway of rRNA processing in the nucleolus and cytosol R-RNO-72689, Formation of a pool of free 40S subunits R-RNO-72706, GTP hydrolysis and joining of the 60S ribosomal subunit R-RNO-975956, Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC) R-RNO-975957, Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC) |
Names & Taxonomyi
Protein namesi | Recommended name: 60S ribosomal protein L3Alternative name(s): L4 |
Gene namesi | Name:Rpl3 |
Organismi | Rattus norvegicus (Rat) |
Taxonomic identifieri | 10116 [NCBI] |
Taxonomic lineagei | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Myomorpha › Muroidea › Muridae › Murinae › Rattus |
Proteomesi |
|
Organism-specific databases
RGDi | 735105, Rpl3 |
Subcellular locationi
Cytosol
- cytosolic large ribosomal subunit Source: RGD
Nucleus
- nucleolus Source: UniProtKB
Other locations
- protein-containing complex Source: RGD
- ribosome Source: RGD
- synapse Source: SynGO
Keywords - Cellular componenti
Cytoplasm, NucleusPTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Initiator methioninei | Removed1 Publication | |||
ChainiPRO_0000077231 | 2 – 403 | 60S ribosomal protein L3Add BLAST | 402 |
Amino acid modifications
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Modified residuei | 13 | PhosphoserineBy similarity | 1 | |
Cross-linki | 39 | Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)By similarity | ||
Modified residuei | 136 | N6-acetyllysineBy similarity | 1 | |
Cross-linki | 224 | Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)By similarity | ||
Cross-linki | 226 | Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)By similarity | ||
Modified residuei | 286 | N6-acetyllysine; alternateBy similarity | 1 | |
Cross-linki | 286 | Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2); alternateBy similarity | ||
Modified residuei | 294 | N6-acetyllysine; alternateBy similarity | 1 | |
Cross-linki | 294 | Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO1); alternateBy similarity | ||
Modified residuei | 304 | PhosphoserineBy similarity | 1 | |
Modified residuei | 366 | N6-acetyllysine; alternateBy similarity | 1 | |
Cross-linki | 366 | Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2); alternateBy similarity | ||
Modified residuei | 373 | N6-acetyllysineBy similarity | 1 | |
Cross-linki | 386 | Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)By similarity | ||
Cross-linki | 393 | Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)By similarity | ||
Cross-linki | 399 | Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)By similarity |
Keywords - PTMi
Acetylation, Isopeptide bond, Phosphoprotein, Ubl conjugationProteomic databases
jPOSTi | P21531 |
PaxDbi | P21531 |
PRIDEi | P21531 |
PTM databases
iPTMneti | P21531 |
PhosphoSitePlusi | P21531 |
SwissPalmi | P21531 |
Expressioni
Gene expression databases
Bgeei | ENSRNOG00000016896, Expressed in Ammon's horn and 21 other tissues |
ExpressionAtlasi | P21531, baseline and differential |
Genevisiblei | P21531, RN |
Interactioni
Subunit structurei
Component of the large ribosomal subunit.
Interacts with METTL18.
Interacts with DHX33.
By similarityProtein-protein interaction databases
BioGRIDi | 256443, 5 interactors |
IntActi | P21531, 5 interactors |
STRINGi | 10116.ENSRNOP00000060662 |
Family & Domainsi
Sequence similaritiesi
Belongs to the universal ribosomal protein uL3 family.Curated
Phylogenomic databases
eggNOGi | KOG0746, Eukaryota |
GeneTreei | ENSGT00390000017606 |
HOGENOMi | CLU_033361_2_1_1 |
InParanoidi | P21531 |
OMAi | HQRTEYN |
OrthoDBi | 793191at2759 |
PhylomeDBi | P21531 |
TreeFami | TF300555 |
Family and domain databases
InterProi | View protein in InterPro IPR000597, Ribosomal_L3 IPR019926, Ribosomal_L3_CS IPR009000, Transl_B-barrel_sf |
Pfami | View protein in Pfam PF00297, Ribosomal_L3, 1 hit |
SUPFAMi | SSF50447, SSF50447, 1 hit |
PROSITEi | View protein in PROSITE PS00474, RIBOSOMAL_L3, 1 hit |
(1+)i Sequence
Sequence statusi: Complete.
: The displayed sequence is further processed into a mature form. Sequence processingi
This entry has 1 described isoform and 2 potential isoforms that are computationally mapped.Show allAlign All
P21531-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MSHRKFSAPR HGSLGFLPRK RSSRHRGKVK SFPKDDPSKP VHLTAFLGYK
60 70 80 90 100
AGMTHIVREV DRPGSKVNKK EVVEAVTIVE TPPMVVVGIV GYVETPRGLR
110 120 130 140 150
TFKTVFAEHI SDECKRRFYK NWHKSKKKAF TKYCKKWQDD TGKKQLEKDF
160 170 180 190 200
NSMKKYCQVI RIIAHTQMRL LPLRQKKAHL MEIQVNGGTV AEKLDWARER
210 220 230 240 250
LEQQVPVNQV FGQDEMIDVI GVTKGKGYKG VTSRWHTKKL PRKTHRGLRK
260 270 280 290 300
VACIGAWHPA RVAFSVARAG QKGYHHRTEI NKKIYKIGQG YLIKDGKLIK
310 320 330 340 350
NNASTDYDLS DKSINPLGGF VHYGEVTNDF IMLKGCVVGT KKRVLTLRKS
360 370 380 390 400
LLVQTKRRAL EKIDLKFIDT TSKFGHGRFQ TMEEKKAFMG PLKKDRIAKE
EGA
Computationally mapped potential isoform sequencesi
There are 2 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basketA0A0U1RRY5 | A0A0U1RRY5_RAT | 60S ribosomal protein L3 | Rpl3 | 180 | Annotation score: | ||
A0A0U1RRR9 | A0A0U1RRR9_RAT | 60S ribosomal protein L3 | Rpl3 | 17 | Annotation score: |
Experimental Info
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Sequence conflicti | 19 | R → T AA sequence (PubMed:6355773).Curated | 1 |
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | X62166 mRNA Translation: CAA44095.1 BC058494 mRNA Translation: AAH58494.1 |
PIRi | JQ1536, R5RT3L |
RefSeqi | NP_942048.1, NM_198753.2 |
Genome annotation databases
Ensembli | ENSRNOT00000067032; ENSRNOP00000060662; ENSRNOG00000016896 ENSRNOT00000089407; ENSRNOP00000069877; ENSRNOG00000016896 |
GeneIDi | 300079 |
KEGGi | rno:300079 |
UCSCi | RGD:735105, rat |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | X62166 mRNA Translation: CAA44095.1 BC058494 mRNA Translation: AAH58494.1 |
PIRi | JQ1536, R5RT3L |
RefSeqi | NP_942048.1, NM_198753.2 |
3D structure databases
SMRi | P21531 |
ModBasei | Search... |
Protein-protein interaction databases
BioGRIDi | 256443, 5 interactors |
IntActi | P21531, 5 interactors |
STRINGi | 10116.ENSRNOP00000060662 |
PTM databases
iPTMneti | P21531 |
PhosphoSitePlusi | P21531 |
SwissPalmi | P21531 |
Proteomic databases
jPOSTi | P21531 |
PaxDbi | P21531 |
PRIDEi | P21531 |
Genome annotation databases
Ensembli | ENSRNOT00000067032; ENSRNOP00000060662; ENSRNOG00000016896 ENSRNOT00000089407; ENSRNOP00000069877; ENSRNOG00000016896 |
GeneIDi | 300079 |
KEGGi | rno:300079 |
UCSCi | RGD:735105, rat |
Organism-specific databases
CTDi | 6122 |
RGDi | 735105, Rpl3 |
Phylogenomic databases
eggNOGi | KOG0746, Eukaryota |
GeneTreei | ENSGT00390000017606 |
HOGENOMi | CLU_033361_2_1_1 |
InParanoidi | P21531 |
OMAi | HQRTEYN |
OrthoDBi | 793191at2759 |
PhylomeDBi | P21531 |
TreeFami | TF300555 |
Enzyme and pathway databases
Reactomei | R-RNO-156827, L13a-mediated translational silencing of Ceruloplasmin expression R-RNO-1799339, SRP-dependent cotranslational protein targeting to membrane R-RNO-6791226, Major pathway of rRNA processing in the nucleolus and cytosol R-RNO-72689, Formation of a pool of free 40S subunits R-RNO-72706, GTP hydrolysis and joining of the 60S ribosomal subunit R-RNO-975956, Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC) R-RNO-975957, Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC) |
Miscellaneous databases
PROi | PR:P21531 |
Gene expression databases
Bgeei | ENSRNOG00000016896, Expressed in Ammon's horn and 21 other tissues |
ExpressionAtlasi | P21531, baseline and differential |
Genevisiblei | P21531, RN |
Family and domain databases
InterProi | View protein in InterPro IPR000597, Ribosomal_L3 IPR019926, Ribosomal_L3_CS IPR009000, Transl_B-barrel_sf |
Pfami | View protein in Pfam PF00297, Ribosomal_L3, 1 hit |
SUPFAMi | SSF50447, SSF50447, 1 hit |
PROSITEi | View protein in PROSITE PS00474, RIBOSOMAL_L3, 1 hit |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | RL3_RAT | |
Accessioni | P21531Primary (citable) accession number: P21531 | |
Entry historyi | Integrated into UniProtKB/Swiss-Prot: | May 1, 1991 |
Last sequence update: | January 23, 2007 | |
Last modified: | April 7, 2021 | |
This is version 151 of the entry and version 3 of the sequence. See complete history. | ||
Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | |
Annotation program | Chordata Protein Annotation Program |
Miscellaneousi
Keywords - Technical termi
Direct protein sequencing, Reference proteomeDocuments
- Ribosomal proteins
Ribosomal proteins families and list of entries - SIMILARITY comments
Index of protein domains and families