A0A6J0JXT2 · A0A6J0JXT2_RAPSA
- ProteinAuxin response factor
- GeneLOC108812733
- StatusUniProtKB unreviewed (TrEMBL)
- Amino acids657 (go to sequence)
- Protein existenceInferred from homology
- Annotation score2/5
Function
function
Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
GO annotations
Aspect | Term | |
---|---|---|
Cellular Component | nucleus | |
Molecular Function | DNA binding | |
Biological Process | auxin-activated signaling pathway | |
Biological Process | regulation of DNA-templated transcription |
Keywords
- Molecular function
- Biological process
Names & Taxonomy
Protein names
- Recommended nameAuxin response factor
Gene names
Organism names
- Taxonomic lineageEukaryota > Viridiplantae > Streptophyta > Embryophyta > Tracheophyta > Spermatophyta > Magnoliopsida > eudicotyledons > Gunneridae > Pentapetalae > rosids > malvids > Brassicales > Brassicaceae > Brassiceae > Raphanus
Accessions
- Primary accessionA0A6J0JXT2
Proteomes
Subcellular Location
Interaction
Subunit
Homodimers and heterodimers.
Structure
Family & Domains
Features
Showing features for domain, region, compositional bias.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Domain | 124-226 | TF-B3 | ||||
Sequence: FCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHNNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENEELRVGVRRHM | ||||||
Region | 358-404 | Disordered | ||||
Sequence: NNTPSAHLPPQRNKRPRPPGLPSPTTAPSTPDGVWKSPADNPSSVPL | ||||||
Compositional bias | 368-383 | Pro residues | ||||
Sequence: QRNKRPRPPGLPSPTT | ||||||
Region | 493-533 | Disordered | ||||
Sequence: QPPSNEFDSSQQSESLNINQASGDPEKSSLRSPQESQSRQI | ||||||
Compositional bias | 495-533 | Polar residues | ||||
Sequence: PSNEFDSSQQSESLNINQASGDPEKSSLRSPQESQSRQI | ||||||
Domain | 534-627 | PB1 | ||||
Sequence: RSCTKVHMQGSAVGRAVDLTRSECYEDLFKKLEEMFDIKGELLQSTKKWQVVYTDDEDDMMMVGDDPWNEFCGMVRKIFIYTPEEVKKLSPKNK | ||||||
Region | 630-657 | Disordered | ||||
Sequence: VNVRMQSKTDADENGNAEGRSSSMAGSR |
Sequence similarities
Belongs to the ARF family.
Phylogenomic databases
Family and domain databases
Sequence
- Sequence statusComplete
- Length657
- Mass (Da)72,948
- Last updated2020-10-07 v1
- Checksum08DEAEEDD684B0F8
Features
Showing features for compositional bias.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Compositional bias | 368-383 | Pro residues | ||||
Sequence: QRNKRPRPPGLPSPTT | ||||||
Compositional bias | 495-533 | Polar residues | ||||
Sequence: PSNEFDSSQQSESLNINQASGDPEKSSLRSPQESQSRQI |
Keywords
- Technical term