A0A3M7D5P0 · A0A3M7D5P0_HORWE

  • Protein
    Ribosome biogenesis protein YTM1
  • Gene
    YTM1
  • Status
    UniProtKB unreviewed (TrEMBL)
  • Amino acids
  • Protein existence
    Inferred from homology
  • Annotation score
    2/5

Function

function

Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.

GO annotations

all annotationsall molecular functionvirus receptor activitydna bindingrna bindingcytoskeletal motor activitycatalytic activitygtpase activitystructural molecule activitytransporter activitycytoskeletal protein bindinglipid bindingcyclase activityantioxidant activityoxidoreductase activitytransferase activityhydrolase activitylyase activityisomerase activityligase activityprotein tag activitycargo receptor activityhistone bindingprotein folding chaperonetranslation regulator activitynutrient reservoir activityreceptor ligand activitymolecular transducer activitymolecular adaptor activitytoxin activitycell adhesion mediator activitymolecular function regulator activityvirus coreceptor activitycatalytic activity, acting on a proteincatalytic activity, acting on dnacatalytic activity, acting on rnamolecular carrier activitytranscription regulator activitygeneral transcription initiation factor activitymolecular sensor activitymolecular sequestering activityatp-dependent activityother molecular functionall biological processmitotic cell cyclecytokinesiscytoplasmic translationimmune system processmuscle system processcirculatory system processrenal system processrespiratory system processcarbohydrate metabolic processgeneration of precursor metabolites and energydna replicationdna repairdna recombinationchromatin organizationdna-templated transcriptionregulation of dna-templated transcriptiontrna metabolic processprotein foldingprotein glycosylationamino acid metabolic processmodified amino acid metabolic processlipid metabolic processvitamin metabolic processsulfur compound metabolic processintracellular protein transportnucleocytoplasmic transportautophagyinflammatory responsemitochondrion organizationcytoskeleton organizationmicrotubule-based movementperoxisome organizationlysosome organizationchromosome segregationcell adhesionestablishment or maintenance of cell polarityprogrammed cell deathphotosynthesismrna metabolic processsnrna metabolic processvesicle-mediated transportreproductive processdigestive system processsignalingcell differentiationprotein catabolic processextracellular matrix organizationregulatory ncrna-mediated gene silencingtelomere organizationcell junction organizationwound healingribosome biogenesiscilium organizationanatomical structure developmentcell motilitynervous system processendocrine processprotein maturationtransmembrane transportnucleobase-containing small molecule metabolic processhepaticobiliary system processmembrane organizationprotein-containing complex assemblycell wall organization or biogenesisnitrogen cycle metabolic processprotein localization to plasma membranedefense response to other organismdetoxificationmeiotic nuclear divisionmitotic nuclear divisionmitochondrial gene expressioncarbohydrate derivative metabolic processother biological processall cellular componentnuclear chromosomeextracellular regionextracellular spacecell wallnucleusnuclear envelopenucleoplasmchromosomenucleolusmitochondrionlysosomeendosomevacuoleperoxisomeendoplasmic reticulumgolgi apparatuslipid dropletmicrotubule organizing centercytosolribosomecytoskeletonplasma membraneciliumplastidthylakoidexternal encapsulating structureextracellular matrixcytoplasmic vesicleorganelleother cellular component
Cell color indicative of number of GO terms
AspectTerm
Cellular Componentnucleoplasm
Cellular ComponentPeBoW complex
Cellular Componentpreribosome, large subunit precursor
Molecular Functionribonucleoprotein complex binding
Biological Processmaturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
Biological Processmaturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

Keywords

Names & Taxonomy

Protein names

  • Recommended name
    Ribosome biogenesis protein YTM1

Gene names

    • Name
      YTM1
    • ORF names
      D0865_01953

Organism names

  • Taxonomic identifier
  • Organism
  • Strain
    • EXF-151
  • Taxonomic lineage
    Eukaryota > Fungi > Dikarya > Ascomycota > Pezizomycotina > Dothideomycetes > Dothideomycetidae > Mycosphaerellales > Teratosphaeriaceae > Hortaea

Accessions

  • Primary accession
    A0A3M7D5P0

Proteomes

Organism-specific databases

Subcellular Location

Keywords

  • Cellular component

Interaction

Subunit

Component of the NOP7 complex, composed of ERB1, NOP7 and YTM1. Within the NOP7 complex ERB1 appears to interact directly with NOP7 and YTM1. The NOP7 complex also associates with the 66S pre-ribosome.

Family & Domains

Features

Showing features for domain, repeat, region, compositional bias.

TypeIDPosition(s)Description
Domain10-74NLE
Repeat135-151WD
Repeat157-197WD
Repeat206-247WD
Region239-276Disordered
Compositional bias255-276Polar residues
Repeat276-318WD
Repeat363-405WD

Sequence similarities

Belongs to the WD repeat WDR12/YTM1 family.

Keywords

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Length
    461
  • Mass (Da)
    49,689
  • Last updated
    2019-02-13 v1
  • Checksum
    51B724D2EA7E81C9
MASSDGTSQVRIHLKTRSPDLELPQDTGPILVSTELKRYQLSTLVNRLLETEKPVPLEFLINGQFLRTSLDEFLTQNGISAETTLSVEYVKALVPPLFVSSYEHDDWVSSLDVLSQGSRPAQWAGEQAGAVSQRILTGSYDGLLRVWNMSNDVVATGQGHTAAVKAAKFISPQQVVSSGVDRTLRLWKFDDAEAAGAGSLTPTMELYGHRAAVENLAVHAPSSRILSASSDHSVGLWSTKKSEAPAAPETLLPSNKRRKLSSSAKASPQRGPLSMLQGHQSQVADVCFDEKDSTVAYSASWDHSVKTWDLTTSACVDTRTTAQSLFSICHLPEAGLLATGTSARHITLIDPRVDARTVSAMTLRGHMNAVVSLARDPSSSYQIVSGSHDGTCRIWDIRSARQEATDRVGEAVYVIDRESAKGKPRSAVGEGVKVLGVQWDPEVGIVSGGEDKRVQINKGSS

Features

Showing features for compositional bias.

TypeIDPosition(s)Description
Compositional bias255-276Polar residues

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
QWIN01000089
EMBL· GenBank· DDBJ
RMY59658.1
EMBL· GenBank· DDBJ
Genomic DNA

Similar Proteins

Disclaimer

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