A0A1A6HLA1 · A0A1A6HLA1_NEOLE
- ProteinProtein CASC3
- StatusUniProtKB unreviewed (TrEMBL)
- Organism
- Amino acids522 (go to sequence)
- Protein existenceInferred from homology
- Annotation score2/5
Function
GO annotations
all annotations | all molecular function | virus receptor activity | dna binding | rna binding | cytoskeletal motor activity | catalytic activity | gtpase activity | structural molecule activity | transporter activity | cytoskeletal protein binding | lipid binding | cyclase activity | antioxidant activity | oxidoreductase activity | transferase activity | hydrolase activity | lyase activity | isomerase activity | ligase activity | protein tag activity | cargo receptor activity | histone binding | protein folding chaperone | translation regulator activity | nutrient reservoir activity | receptor ligand activity | molecular transducer activity | molecular adaptor activity | toxin activity | cell adhesion mediator activity | molecular function regulator activity | virus coreceptor activity | catalytic activity, acting on a protein | catalytic activity, acting on dna | catalytic activity, acting on rna | molecular carrier activity | transcription regulator activity | general transcription initiation factor activity | molecular sensor activity | molecular sequestering activity | atp-dependent activity | other molecular function | all biological process | mitotic cell cycle | cytokinesis | cytoplasmic translation | immune system process | muscle system process | circulatory system process | renal system process | respiratory system process | carbohydrate metabolic process | generation of precursor metabolites and energy | dna replication | dna repair | dna recombination | chromatin organization | dna-templated transcription | regulation of dna-templated transcription | trna metabolic process | protein folding | protein glycosylation | amino acid metabolic process | modified amino acid metabolic process | lipid metabolic process | vitamin metabolic process | sulfur compound metabolic process | intracellular protein transport | nucleocytoplasmic transport | autophagy | inflammatory response | mitochondrion organization | cytoskeleton organization | microtubule-based movement | peroxisome organization | lysosome organization | chromosome segregation | cell adhesion | establishment or maintenance of cell polarity | programmed cell death | photosynthesis | mrna metabolic process | snrna metabolic process | vesicle-mediated transport | reproductive process | digestive system process | signaling | cell differentiation | protein catabolic process | extracellular matrix organization | regulatory ncrna-mediated gene silencing | telomere organization | cell junction organization | wound healing | ribosome biogenesis | cilium organization | anatomical structure development | cell motility | nervous system process | endocrine process | protein maturation | transmembrane transport | nucleobase-containing small molecule metabolic process | hepaticobiliary system process | membrane organization | protein-containing complex assembly | cell wall organization or biogenesis | nitrogen cycle metabolic process | protein localization to plasma membrane | defense response to other organism | detoxification | meiotic nuclear division | mitotic nuclear division | mitochondrial gene expression | carbohydrate derivative metabolic process | other biological process | all cellular component | nuclear chromosome | extracellular region | extracellular space | cell wall | nucleus | nuclear envelope | nucleoplasm | chromosome | nucleolus | mitochondrion | lysosome | endosome | vacuole | peroxisome | endoplasmic reticulum | golgi apparatus | lipid droplet | microtubule organizing center | cytosol | ribosome | cytoskeleton | plasma membrane | cilium | plastid | thylakoid | external encapsulating structure | extracellular matrix | cytoplasmic vesicle | organelle | other cellular component | |||
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Aspect | Term | |
---|---|---|
Cellular Component | cell projection | |
Cellular Component | cytoplasm | |
Cellular Component | exon-exon junction complex | |
Molecular Function | mRNA binding | |
Biological Process | mRNA processing | |
Biological Process | mRNA transport | |
Biological Process | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | |
Biological Process | regulation of translation | |
Biological Process | RNA splicing |
Keywords
- Molecular function
- Biological process
Names & Taxonomy
Protein names
- Recommended nameProtein CASC3
Gene names
Organism names
- Organism
- Strain
- Taxonomic lineageEukaryota > Metazoa > Chordata > Craniata > Vertebrata > Euteleostomi > Mammalia > Eutheria > Euarchontoglires > Glires > Rodentia > Myomorpha > Muroidea > Cricetidae > Neotominae > Neotoma
Accessions
- Primary accessionA0A1A6HLA1
Proteomes
Subcellular Location
UniProt Annotation
GO Annotation
Keywords
- Cellular component
Interaction
Protein-protein interaction databases
Structure
Family & Domains
Features
Showing features for domain, region, compositional bias.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Domain | 8-68 | Btz | ||||
Sequence: AMLFFPIMKVRKIQKPKGRQRKLWKDEGRWEHDKFREDEQAPKSRQELIALYGYDIRSAHN | ||||||
Region | 67-283 | Disordered | ||||
Sequence: HNPDDIKPRRIRKPRFGSPPQRDPNWIGDRPNKSHRHQGPGGSLPPRTFINRNAAGTGRMSASRNYSRSGGFKDGRTSFRPVEVGGQHGGRSGETHKHEANYRSRRLEQTPMRDPSPEPDAPLLGSPEKEEAASETPAAIPDTVPPAPDRPIEKKSYSRARRTRTKVGDAVKAAEEVPPPSEGLTSAATIPETTPPPAAKTGNWEAPVDSTTGGLEQ | ||||||
Compositional bias | 120-138 | Polar residues | ||||
Sequence: AAGTGRMSASRNYSRSGGF | ||||||
Compositional bias | 156-179 | Basic and acidic residues | ||||
Sequence: GRSGETHKHEANYRSRRLEQTPMR | ||||||
Compositional bias | 214-237 | Basic and acidic residues | ||||
Sequence: PDRPIEKKSYSRARRTRTKVGDAV | ||||||
Region | 452-522 | Disordered | ||||
Sequence: PSYPYAPGALPPPPPPHLYPNTQAPSQVYGGVTYYNPAQQQVQPKPSPPRRTPQPVSIKPPPPEVVSRGSS | ||||||
Compositional bias | 456-472 | Pro residues | ||||
Sequence: YAPGALPPPPPPHLYPN | ||||||
Compositional bias | 473-492 | Polar residues | ||||
Sequence: TQAPSQVYGGVTYYNPAQQQ | ||||||
Compositional bias | 493-513 | Pro residues | ||||
Sequence: VQPKPSPPRRTPQPVSIKPPP |
Sequence similarities
Belongs to the CASC3 family.
Family and domain databases
Sequence
- Sequence statusFragment
- Length522
- Mass (Da)57,558
- Last updated2016-10-05 v1
- ChecksumD1E12F0DBA51C10C
Features
Showing features for non-terminal residue, compositional bias.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Non-terminal residue | 1 | |||||
Sequence: R | ||||||
Compositional bias | 120-138 | Polar residues | ||||
Sequence: AAGTGRMSASRNYSRSGGF | ||||||
Compositional bias | 156-179 | Basic and acidic residues | ||||
Sequence: GRSGETHKHEANYRSRRLEQTPMR | ||||||
Compositional bias | 214-237 | Basic and acidic residues | ||||
Sequence: PDRPIEKKSYSRARRTRTKVGDAV | ||||||
Compositional bias | 456-472 | Pro residues | ||||
Sequence: YAPGALPPPPPPHLYPN | ||||||
Compositional bias | 473-492 | Polar residues | ||||
Sequence: TQAPSQVYGGVTYYNPAQQQ | ||||||
Compositional bias | 493-513 | Pro residues | ||||
Sequence: VQPKPSPPRRTPQPVSIKPPP |
Keywords
- Technical term