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Plant protein annotation project

Statistics

UniProt release 2020_03 - Apr-22, 2020 contains a total of 562,755 reviewed entries, which includes 40,435 entries from 2,025 species of Viridiplantae.

Arabidospis thaliana - 15,983 reviewed entries.

Number of canonical and isoform protein sequences: organism:3702 reviewed:yes (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 43.8%
at transcript level 42.3%
inferred from homology 10.1%
predicted 3%
uncertain 0.7%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 15,983 13,510 unique 100%
Alternative products 3,172 0 19.8%
General annotation 15,409 72,839 96.4%
Function 11,220 11,329 70.2%
Catalytic activity 4,376 5,856 27.4%
Subcellular location 12,059 25,492 N/A
Sequence annotation 15,379 146,417 96.2%
Amino acid modifications 4,996 19,054 31.3%
Natural Variant 130 818 0.8%
Cross-references 15,983 0 100%
EMBL 15,953 0 99.8%
InterPro 15,454 0 96.7%
PDB 703 0 4.4%
RefSeq 15,661 0 98%
TAIR 14,726 0 92.1%

100% of reviewed Arabidopsis thaliana entries are annotated with at least one keyword .

94.7% of reviewed Arabidopsis thaliana entries are annotated with at least one GO (Gene Ontology ) term.

Oryza sativa subsp. japonica (Rice) - 4,081 reviewed entries.

Number of canonical and isoform protein sequences: organism:39947 reviewed:yes (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 19.6%
at transcript level 63.5%
inferred from homology 16.2%
predicted 0.3%
uncertain 0.3%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 4,081 1,891 unique 100%
Alternative products 296 0 7.3%
General annotation 4,007 18,044 98.2%
Function 3,239 3,267 79.4%
Catalytic activity 1,406 1,883 34.5%
Subcellular location 2,911 uniprot:(organism:39947 reviewed:yes) 71.3%
Sequence annotation 3,844 32,033 94.2%
Amino acid modifications 820 2,637 20.1%
Natural Variant 9 24 0.2%
Cross-references 4,081 0 100%
EMBL 4,081 0 100%
InterPro 4,051 0 99.3%
PDB 73 0 1.8%
RefSeq 3,552 0 87%

100% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one keyword .

98.5% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one GO (Gene Ontology ) term.

Oryza sativa subsp. indica (Rice) - 846 reviewed entries.

Number of canonical and isoform protein sequences: organism:39946 reviewed:yes (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 9%
at transcript level 27.1%
inferred from homology 62.5%
predicted 1.3%
uncertain 0.1%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 846 262 unique 100%
Alternative products 8 0 0.9%
General annotation 841 3,104 99.4%
Function 719 731 85%
Catalytic activity 256 338 30.3%
Subcellular location 680 1,322 80.4%
Sequence annotation 788 5,933 93.1%
Amino acid modifications 151 451 17.8%
Natural Variant 5 8 0.6%
Cross-references 846 0 100%
EMBL 846 0 100%
InterPro 830 0 98.1%
PDB 4 0 0.5%
RefSeq 71 0 8.4%

99.9% of reviewed Oryza sativa subsp. indica entries are annotated with at least one keyword .

97.9% of reviewed Oryza sativa subsp. indica entries are annotated with at least one GO (Gene Ontology ) term.

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