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Plant protein annotation project

Statistics

UniProt release 2019_10 - Nov-13, 2019 contains a total of 561,356 reviewed entries, which includes 40,171 entries from 2,013 species of Viridiplantae.

Arabidospis thaliana - 15,911 reviewed entries.

Number of canonical and isoform protein sequences: organism:3702 reviewed:yes (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 43.6%
at transcript level 42.5%
inferred from homology 10.2%
predicted 3.1%
uncertain 0.7%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 15,911 13,296 unique 100%
Alternative products 3,161 0 19.9%
General annotation 15,336 71,705 96.4%
Function 11,143 11,257 70%
Catalytic activity 4,326 5,742 27.2%
Subcellular location 11,990 25,261 N/A
Sequence annotation 15,309 144,982 96.2%
Amino acid modifications 4,984 18,971 31.3%
Natural Variant 129 817 0.8%
Cross-references 15,911 0 100%
EMBL 15,881 0 99.8%
InterPro 15,406 0 96.8%
PDB 668 0 4.2%
RefSeq 15,589 0 98%
TAIR 14,659 0 92.1%

100% of reviewed Arabidopsis thaliana entries are annotated with at least one keyword .

94.6% of reviewed Arabidopsis thaliana entries are annotated with at least one GO (Gene Ontology ) term.

Oryza sativa subsp. japonica (Rice) - 4,067 reviewed entries.

Number of canonical and isoform protein sequences: organism:39947 reviewed:yes (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 19.5%
at transcript level 63.6%
inferred from homology 16.3%
predicted 0.3%
uncertain 0.3%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 4,067 1,875 unique 100%
Alternative products 295 0 7.3%
General annotation 3,993 17,889 98.2%
Function 3,225 3,252 79.3%
Catalytic activity 1,399 1,877 34.4%
Subcellular location 2,893 uniprot:(organism:39947 reviewed:yes) 71.1%
Sequence annotation 3,830 31,865 94.2%
Amino acid modifications 820 2,628 20.2%
Natural Variant 9 24 0.2%
Cross-references 4,067 0 100%
EMBL 4,067 0 100%
InterPro 4,038 0 99.3%
PDB 73 0 1.8%
RefSeq 3,538 0 87%

100% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one keyword .

98.6% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one GO (Gene Ontology ) term.

Oryza sativa subsp. indica (Rice) - 844 reviewed entries.

Number of canonical and isoform protein sequences: organism:39946 reviewed:yes (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 8.9%
at transcript level 27.3%
inferred from homology 62.4%
predicted 1.3%
uncertain 0.1%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 844 261 unique 100%
Alternative products 8 0 0.9%
General annotation 839 3,095 99.4%
Function 717 728 85%
Catalytic activity 256 338 30.3%
Subcellular location 677 1,317 80.2%
Sequence annotation 786 5,893 93.1%
Amino acid modifications 151 448 17.9%
Natural Variant 5 8 0.6%
Cross-references 844 0 100%
EMBL 844 0 100%
InterPro 828 0 98.1%
PDB 4 0 0.5%
RefSeq 71 0 8.4%

99.9% of reviewed Oryza sativa subsp. indica entries are annotated with at least one keyword .

97.7% of reviewed Oryza sativa subsp. indica entries are annotated with at least one GO (Gene Ontology ) term.

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