A0A0R6MFT6 · A0A0R6MFT6_UNDPI
- ProteinDNA-directed RNA polymerase subunit beta'
- GenerpoC1
- StatusUniProtKB unreviewed (TrEMBL)
- Amino acids610 (go to sequence)
- Protein existenceInferred from homology
- Annotation score3/5
Function
function
DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
Catalytic activity
- RNA(n) + a ribonucleoside 5'-triphosphate = RNA(n+1) + diphosphate
Cofactor
Protein has several cofactor binding sites:
Note: Binds 1 Mg2+ ion per subunit.
Note: Binds 1 Zn2+ ion per subunit.
Features
Showing features for binding site.
Type | ID | Position(s) | Description | ||
---|---|---|---|---|---|
Binding site | 70 | Zn2+ (UniProtKB | ChEBI) | |||
Binding site | 72 | Zn2+ (UniProtKB | ChEBI) | |||
Binding site | 85 | Zn2+ (UniProtKB | ChEBI) | |||
Binding site | 88 | Zn2+ (UniProtKB | ChEBI) | |||
Binding site | 453 | Mg2+ (UniProtKB | ChEBI) | |||
Binding site | 455 | Mg2+ (UniProtKB | ChEBI) | |||
Binding site | 457 | Mg2+ (UniProtKB | ChEBI) | |||
GO annotations
Aspect | Term | |
---|---|---|
Cellular Component | chloroplast | |
Cellular Component | DNA-directed RNA polymerase complex | |
Molecular Function | DNA binding | |
Molecular Function | DNA-directed 5'-3' RNA polymerase activity | |
Molecular Function | magnesium ion binding | |
Molecular Function | zinc ion binding | |
Biological Process | DNA-templated transcription |
Keywords
- Molecular function
- Biological process
- Ligand
Enzyme and pathway databases
Names & Taxonomy
Protein names
- Recommended nameDNA-directed RNA polymerase subunit beta'
- EC number
- Alternative names
Gene names
Encoded on
- Chloroplast
Organism names
- Taxonomic lineageEukaryota > Sar > Stramenopiles > Ochrophyta > PX clade > Phaeophyceae > Laminariales > Alariaceae > Undaria
Accessions
- Primary accessionA0A0R6MFT6
Subcellular Location
Interaction
Subunit
In plastids the minimal PEP RNA polymerase catalytic core is composed of four subunits: alpha, beta, beta', and beta''. When a (nuclear-encoded) sigma factor is associated with the core the holoenzyme is formed, which can initiate transcription.
Structure
Family & Domains
Features
Showing features for domain.
Type | ID | Position(s) | Description | ||
---|---|---|---|---|---|
Domain | 228-507 | RNA polymerase N-terminal | |||
Sequence similarities
Belongs to the RNA polymerase beta' chain family. RpoC1 subfamily.
Family and domain databases
Sequence
- Sequence statusComplete
- Length610
- Mass (Da)70,178
- Last updated2016-02-17 v1
- Checksum01BA109AC9A7E0F8
Sequence databases
Nucleotide Sequence | Protein Sequence | Molecule Type | Status | |
---|---|---|---|---|
KP298002 EMBL· GenBank· DDBJ | AKG49929.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
KU200463 EMBL· GenBank· DDBJ | AMM05482.1 EMBL· GenBank· DDBJ | Genomic DNA |