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A0A0B4MRG0 · A0A0B4MRG0_9APIA

  • Protein
    DNA-directed RNA polymerase subunit beta''
  • Gene
    rpoC2
  • Status
    UniProtKB unreviewed (TrEMBL)
  • Amino acids
  • Protein existence
    Inferred from homology
  • Annotation score
    3/5

Function

function

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.

Catalytic activity

Cofactor

Zn2+ (UniProtKB | Rhea| CHEBI:29105 )

Note: Binds 1 Zn2+ ion per subunit.

Features

Showing features for binding site.

113831002003004005006007008009001,0001,1001,2001,300
TypeIDPosition(s)Description
Binding site220Zn2+ (UniProtKB | ChEBI)
Binding site291Zn2+ (UniProtKB | ChEBI)
Binding site298Zn2+ (UniProtKB | ChEBI)
Binding site301Zn2+ (UniProtKB | ChEBI)

GO annotations

AspectTerm
Cellular Componentchloroplast
Cellular ComponentDNA-directed RNA polymerase complex
Molecular FunctionDNA binding
Molecular FunctionDNA-directed 5'-3' RNA polymerase activity
Molecular Functionzinc ion binding
Biological ProcessDNA-templated transcription

Keywords

Enzyme and pathway databases

Names & Taxonomy

Protein names

  • Recommended name
    DNA-directed RNA polymerase subunit beta''
  • EC number
  • Alternative names
    • PEP
    • Plastid-encoded RNA polymerase subunit beta''
      (RNA polymerase subunit beta''
      )

Gene names

    • Name
      rpoC2
    • ORF names
      WH49_00011

Encoded on

  • Chloroplast

Organism names

  • Taxonomic identifier
  • Organism
  • Strains
    • LCK-1
    • LCK-10
    • LCK-2
    • LCK-3
    • LCK-4
  • Taxonomic lineage
    Eukaryota > Viridiplantae > Streptophyta > Embryophyta > Tracheophyta > Spermatophyta > Magnoliopsida > eudicotyledons > Gunneridae > Pentapetalae > asterids > campanulids > Apiales > Araliaceae > Panax

Accessions

  • Primary accession
    A0A0B4MRG0

Subcellular Location

Keywords

Interaction

Subunit

In plastids the minimal PEP RNA polymerase catalytic core is composed of four subunits: alpha, beta, beta', and beta''. When a (nuclear-encoded) sigma factor is associated with the core the holoenzyme is formed, which can initiate transcription.

Family & Domains

Features

Showing features for domain.

TypeIDPosition(s)Description
Domain93-157RNA polymerase Rpb1
Domain172-365RNA polymerase Rpb1
Domain1188-1274RNA polymerase Rpb1

Sequence similarities

Belongs to the RNA polymerase beta' chain family. RpoC2 subfamily.

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Length
    1,383
  • Mass (Da)
    156,724
  • Last updated
    2015-04-01 v1
  • MD5 Checksum
    BF102C1AA9B932CD80E2F0BA8D78D77B
MAERANLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGIDDLLTIPSKRWLVQDAEQQSLILEKQHHYGNVHAVEKLRQSIEIWYATSEFLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMADPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRKDCGTVRGISVSPRNGMMPERVFIQTLIGRVLADDIYLGPRCIATRNQDIGSGLVNRFITFRAQPIYIRTPFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEDLVHPTRTRHGHPAFICSIDLYVTIESEDIIHNVNIPPKSFLLVQNDQYVESEQVIAEIRAGTSTLNFKEKVRKHIYSDSEGEMHWNTDVYHAPAFTYGNVHLLPKTSHLWILLGEPCRSDLVALSIHKDQDQMNAHSLSVKRRYISNLSVTNDQARHKFFSSDFSGKKEDRITDYSELNRIGHCNLTYLAILHANSDLLAKRRRNRFIIPLQSIQEHENELMPSSGISIEIPIHGIFRKNSIIAYFDDPRYRRKSSGITKYGTIEVHSIVKKEDLIEYRGVKEFRPKYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQITLTTRSRVGGLVRVERKKKRIELKIFSGDIHFPGETDKISRHSGVLIPPGTGKTNSKESKKWKNWIYVQRITPTKKKYFVLVRPVVTYEITDGINLATLFFPDLLQERDNVQLRVVNYILYGTGKPIRGFYDTSIQLVRTCLVLNWVQDKKSSSIEEARTSFVEIRINSLIRDFLKIDLAKSPILYTGKRKDPSGSGLISENGSDRTNINPFSSSFFYSKARIKESLNQNQGTIHTLLNRNKECQSLIILSSSNCFRMGPFNDVKYHNVIKESIQKDPLIPIRNSLGPLGTALQIANFYSFSHLITYNQILVTNYLQLDNLKQSFQVLKYYLMDENGKIYNPDRCCNIILNPFNLNWFFLHHNYCEETSTTMSLGQFICENVCIAKNGPHLKPGQVLIVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNECITRNLGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGEFIGLLRAERMGRALEEAICYQAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGLVPPSRQHKNIPLETKNKNLFEGEMGDILFHHRKFFDSCLSKNFHDTPEQSFIGFNDS

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
KJ566590
EMBL· GenBank· DDBJ
AIA24317.1
EMBL· GenBank· DDBJ
Genomic DNA
KP036468
EMBL· GenBank· DDBJ
AKB99062.1
EMBL· GenBank· DDBJ
Genomic DNA
KR021381
EMBL· GenBank· DDBJ
AKG26590.1
EMBL· GenBank· DDBJ
Genomic DNA
KT001509
EMBL· GenBank· DDBJ
AKU70765.1
EMBL· GenBank· DDBJ
Genomic DNA
MK408925
EMBL· GenBank· DDBJ
QDI95962.1
EMBL· GenBank· DDBJ
Genomic DNA
MK408927
EMBL· GenBank· DDBJ
QDI96136.1
EMBL· GenBank· DDBJ
Genomic DNA
MK408928
EMBL· GenBank· DDBJ
QDI96223.1
EMBL· GenBank· DDBJ
Genomic DNA
MK408931
EMBL· GenBank· DDBJ
QDI96486.1
EMBL· GenBank· DDBJ
Genomic DNA
MK408937
EMBL· GenBank· DDBJ
QDI97011.1
EMBL· GenBank· DDBJ
Genomic DNA
MK408945
EMBL· GenBank· DDBJ
QDI97710.1
EMBL· GenBank· DDBJ
Genomic DNA
MK408946
EMBL· GenBank· DDBJ
QDI97797.1
EMBL· GenBank· DDBJ
Genomic DNA
MK408954
EMBL· GenBank· DDBJ
QDI98498.1
EMBL· GenBank· DDBJ
Genomic DNA
MK408955
EMBL· GenBank· DDBJ
QDI98585.1
EMBL· GenBank· DDBJ
Genomic DNA

Genome annotation databases

Similar Proteins

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