W9SH18 · W9SH18_9ROSA
- ProteinZinc finger CCCH domain-containing protein 40
- StatusUniProtKB unreviewed (TrEMBL)
- Organism
- Amino acids494 (go to sequence)
- Protein existencePredicted
- Annotation score2/5
Function
GO annotations
all annotations | all molecular function | nucleotide binding | molecular_function | nucleic acid binding | dna binding | chromatin binding | dna-binding transcription factor activity | rna binding | cytoskeletal motor activity | catalytic activity | nuclease activity | signaling receptor binding | structural molecule activity | transporter activity | binding | protein binding | translation factor activity, rna binding | lipid binding | kinase activity | transferase activity | hydrolase activity | oxygen binding | enzyme regulator activity | carbohydrate binding | signaling receptor activity | translation regulator activity | transcription regulator activity | other molecular function | all biological process | carbohydrate metabolic process | generation of precursor metabolites and energy | nucleobase-containing compound metabolic process | dna metabolic process | translation | lipid metabolic process | transport | response to stress | cell cycle | cell communication | signal transduction | cell-cell signaling | multicellular organism development | circadian rhythm | biological_process | metabolic process | catabolic process | biosynthetic process | response to light stimulus | response to external stimulus | tropism | response to biotic stimulus | response to abiotic stimulus | response to endogenous stimulus | embryo development | post-embryonic development | fruit ripening | abscission | pollination | flower development | cellular process | programmed cell death | photosynthesis | cellular component organization | cell growth | protein metabolic process | cellular homeostasis | secondary metabolic process | reproductive process | cell differentiation | protein modification process | growth | epigenetic regulation of gene expression | response to chemical | anatomical structure development | regulation of molecular function | other biological process | all cellular component | cellular_component | extracellular region | cell wall | intracellular anatomical structure | nucleus | nuclear envelope | nucleoplasm | nucleolus | cytoplasm | mitochondrion | lysosome | endosome | vacuole | peroxisome | endoplasmic reticulum | golgi apparatus | cytosol | ribosome | cytoskeleton | plasma membrane | chloroplast | plastid | thylakoid | membrane | external encapsulating structure | other cellular component | |||
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Aspect | Term | |
---|---|---|
Cellular Component | Prp19 complex | |
Cellular Component | U2-type catalytic step 1 spliceosome | |
Cellular Component | U2-type catalytic step 2 spliceosome | |
Molecular Function | DNA binding | |
Molecular Function | metal ion binding | |
Molecular Function | pre-mRNA binding | |
Molecular Function | U6 snRNA binding |
Keywords
- Molecular function
- Ligand
Names & Taxonomy
Protein names
- Submitted names
Gene names
Organism names
- Organism
- Taxonomic lineageEukaryota > Viridiplantae > Streptophyta > Embryophyta > Tracheophyta > Spermatophyta > Magnoliopsida > eudicotyledons > Gunneridae > Pentapetalae > rosids > fabids > Rosales > Moraceae > Moreae > Morus
Accessions
- Primary accessionW9SH18
Proteomes
Subcellular Location
UniProt Annotation
GO Annotation
Interaction
Protein-protein interaction databases
Structure
Family & Domains
Features
Showing features for domain, zinc finger, region, compositional bias.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Domain | 157-184 | C3H1-type | ||||
Sequence: RNRAHVCSFYIRGECTRGAECPYRHEMP | ||||||
Zinc finger | 157-184 | C3H1-type | ||||
Sequence: RNRAHVCSFYIRGECTRGAECPYRHEMP | ||||||
Domain | 228-301 | RRM | ||||
Sequence: KTLYVGGLDARITEQDLRDNFYAHGEIESVRMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGRP | ||||||
Region | 301-321 | Disordered | ||||
Sequence: PQAPKPETDASDEARQQAAAA | ||||||
Region | 344-494 | Disordered | ||||
Sequence: PLHYYNIPPPPQPERNFYPSMDPQRMGALTHSQEGASSGSTGSGENKPGQEKQQHAQHFTYQPMPPPHGQYHQKYYPPYGYMPPPPPPYQQYPPPYHSAMSPPQRPLLNQQFQHSAAPGSTLSGSALSVSTPPASAASGSAPSGSNPTTSS | ||||||
Compositional bias | 369-403 | Polar residues | ||||
Sequence: MGALTHSQEGASSGSTGSGENKPGQEKQQHAQHFT | ||||||
Compositional bias | 421-444 | Pro residues | ||||
Sequence: PYGYMPPPPPPYQQYPPPYHSAMS | ||||||
Compositional bias | 446-494 | Polar residues | ||||
Sequence: PQRPLLNQQFQHSAAPGSTLSGSALSVSTPPASAASGSAPSGSNPTTSS |
Keywords
- Domain
Phylogenomic databases
Family and domain databases
Sequence
- Sequence statusComplete
- Length494
- Mass (Da)55,163
- Last updated2014-05-14 v1
- Checksum5A3640BE694A6A05
Features
Showing features for compositional bias.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Compositional bias | 369-403 | Polar residues | ||||
Sequence: MGALTHSQEGASSGSTGSGENKPGQEKQQHAQHFT | ||||||
Compositional bias | 421-444 | Pro residues | ||||
Sequence: PYGYMPPPPPPYQQYPPPYHSAMS | ||||||
Compositional bias | 446-494 | Polar residues | ||||
Sequence: PQRPLLNQQFQHSAAPGSTLSGSALSVSTPPASAASGSAPSGSNPTTSS |
Keywords
- Technical term
Sequence databases
Nucleotide Sequence | Protein Sequence | Molecule Type | Status | |
---|---|---|---|---|
KE346181 EMBL· GenBank· DDBJ | EXC28844.1 EMBL· GenBank· DDBJ | Genomic DNA |