W9SH18 · W9SH18_9ROSA

  • Protein
    Zinc finger CCCH domain-containing protein 40
  • Status
    UniProtKB unreviewed (TrEMBL)
  • Amino acids
  • Protein existence
    Predicted
  • Annotation score
    2/5

Function

GO annotations

all annotationsall molecular functionnucleotide bindingmolecular_functionnucleic acid bindingdna bindingchromatin bindingdna-binding transcription factor activityrna bindingcytoskeletal motor activitycatalytic activitynuclease activitysignaling receptor bindingstructural molecule activitytransporter activitybindingprotein bindingtranslation factor activity, rna bindinglipid bindingkinase activitytransferase activityhydrolase activityoxygen bindingenzyme regulator activitycarbohydrate bindingsignaling receptor activitytranslation regulator activitytranscription regulator activityother molecular functionall biological processcarbohydrate metabolic processgeneration of precursor metabolites and energynucleobase-containing compound metabolic processdna metabolic processtranslationlipid metabolic processtransportresponse to stresscell cyclecell communicationsignal transductioncell-cell signalingmulticellular organism developmentcircadian rhythmbiological_processmetabolic processcatabolic processbiosynthetic processresponse to light stimulusresponse to external stimulustropismresponse to biotic stimulusresponse to abiotic stimulusresponse to endogenous stimulusembryo developmentpost-embryonic developmentfruit ripeningabscissionpollinationflower developmentcellular processprogrammed cell deathphotosynthesiscellular component organizationcell growthprotein metabolic processcellular homeostasissecondary metabolic processreproductive processcell differentiationprotein modification processgrowthepigenetic regulation of gene expressionresponse to chemicalanatomical structure developmentregulation of molecular functionother biological processall cellular componentcellular_componentextracellular regioncell wallintracellular anatomical structurenucleusnuclear envelopenucleoplasmnucleoluscytoplasmmitochondrionlysosomeendosomevacuoleperoxisomeendoplasmic reticulumgolgi apparatuscytosolribosomecytoskeletonplasma membranechloroplastplastidthylakoidmembraneexternal encapsulating structureother cellular component
Cell color indicative of number of GO terms
AspectTerm
Cellular ComponentPrp19 complex
Cellular ComponentU2-type catalytic step 1 spliceosome
Cellular ComponentU2-type catalytic step 2 spliceosome
Molecular FunctionDNA binding
Molecular Functionmetal ion binding
Molecular Functionpre-mRNA binding
Molecular FunctionU6 snRNA binding

Keywords

Names & Taxonomy

Protein names

  • Submitted names
    • Zinc finger CCCH domain-containing protein 40

Gene names

    • ORF names
      L484_004974

Organism names

  • Taxonomic identifier
  • Organism
  • Taxonomic lineage
    Eukaryota > Viridiplantae > Streptophyta > Embryophyta > Tracheophyta > Spermatophyta > Magnoliopsida > eudicotyledons > Gunneridae > Pentapetalae > rosids > fabids > Rosales > Moraceae > Moreae > Morus

Accessions

  • Primary accession
    W9SH18

Proteomes

Interaction

Protein-protein interaction databases

Family & Domains

Features

Showing features for domain, zinc finger, region, compositional bias.

TypeIDPosition(s)Description
Domain157-184C3H1-type
Zinc finger157-184C3H1-type
Domain228-301RRM
Region301-321Disordered
Region344-494Disordered
Compositional bias369-403Polar residues
Compositional bias421-444Pro residues
Compositional bias446-494Polar residues

Keywords

Phylogenomic databases

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Length
    494
  • Mass (Da)
    55,163
  • Last updated
    2014-05-14 v1
  • Checksum
    5A3640BE694A6A05
MAHRLLRDAEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGRDARFKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINLNGAIPKSDVNREYFAEEHDRKARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGAECPYRHEMPITGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIKTLYVGGLDARITEQDLRDNFYAHGEIESVRMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGRPQAPKPETDASDEARQQAAAAHGGLLPRAVISQQQNQANDQAAPLHYYNIPPPPQPERNFYPSMDPQRMGALTHSQEGASSGSTGSGENKPGQEKQQHAQHFTYQPMPPPHGQYHQKYYPPYGYMPPPPPPYQQYPPPYHSAMSPPQRPLLNQQFQHSAAPGSTLSGSALSVSTPPASAASGSAPSGSNPTTSS

Features

Showing features for compositional bias.

TypeIDPosition(s)Description
Compositional bias369-403Polar residues
Compositional bias421-444Pro residues
Compositional bias446-494Polar residues

Keywords

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
KE346181
EMBL· GenBank· DDBJ
EXC28844.1
EMBL· GenBank· DDBJ
Genomic DNA

Genome annotation databases

Similar Proteins

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