C5XEK4 · CSPL7_SORBI
- ProteinCASP-like protein 4U1
- StatusUniProtKB reviewed (Swiss-Prot)
- Amino acids461 (go to sequence)
- Protein existenceEvidence at transcript level
- Annotation score2/5
Function
GO annotations
all annotations | all molecular function | nucleotide binding | molecular_function | nucleic acid binding | dna binding | chromatin binding | dna-binding transcription factor activity | rna binding | cytoskeletal motor activity | catalytic activity | nuclease activity | signaling receptor binding | structural molecule activity | transporter activity | binding | protein binding | translation factor activity, rna binding | lipid binding | kinase activity | transferase activity | hydrolase activity | oxygen binding | enzyme regulator activity | carbohydrate binding | signaling receptor activity | translation regulator activity | transcription regulator activity | other molecular function | all biological process | carbohydrate metabolic process | generation of precursor metabolites and energy | nucleobase-containing compound metabolic process | dna metabolic process | translation | lipid metabolic process | transport | response to stress | cell cycle | cell communication | signal transduction | cell-cell signaling | multicellular organism development | circadian rhythm | biological_process | metabolic process | catabolic process | biosynthetic process | response to light stimulus | response to external stimulus | tropism | response to biotic stimulus | response to abiotic stimulus | response to endogenous stimulus | embryo development | post-embryonic development | fruit ripening | abscission | pollination | flower development | cellular process | programmed cell death | photosynthesis | cellular component organization | cell growth | protein metabolic process | cellular homeostasis | secondary metabolic process | reproductive process | cell differentiation | protein modification process | growth | epigenetic regulation of gene expression | response to chemical | anatomical structure development | regulation of molecular function | other biological process | all cellular component | cellular_component | extracellular region | cell wall | intracellular anatomical structure | nucleus | nuclear envelope | nucleoplasm | nucleolus | cytoplasm | mitochondrion | lysosome | endosome | vacuole | peroxisome | endoplasmic reticulum | golgi apparatus | cytosol | ribosome | cytoskeleton | plasma membrane | chloroplast | plastid | thylakoid | membrane | external encapsulating structure | other cellular component | |||
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Aspect | Term | |
---|---|---|
Cellular Component | plasma membrane |
Names & Taxonomy
Protein names
- Recommended nameCASP-like protein 4U1
- Short namesSbCASPL4U1
Gene names
Organism names
- Strain
- Taxonomic lineageEukaryota > Viridiplantae > Streptophyta > Embryophyta > Tracheophyta > Spermatophyta > Magnoliopsida > Liliopsida > Poales > Poaceae > PACMAD clade > Panicoideae > Andropogonodae > Andropogoneae > Sorghinae > Sorghum
Accessions
- Primary accessionC5XEK4
Proteomes
Genome annotation databases
Subcellular Location
UniProt Annotation
GO Annotation
Cell membrane ; Multi-pass membrane protein
Features
Showing features for topological domain, transmembrane.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Topological domain | 1-314 | Cytoplasmic | ||||
Sequence: MASTPRTPAPVRSPPPVPTPTHPTPPPPPLETPQPPLPVSTPPPALETPPPRRVRTPPPPLETPPPPSPSSSQPGDEYHTPAPSLADGSPREEEASFPSDGREGGGAPAPPKSPQLSPMRLAAPRLLLPPPSPRTPTGQNGQEEQEGGAKAAAAGAGTGTGTAAPARQQLRLTGLARSPSSQRSLATTNSSPSPSPSPTPPSPLTPAAAPVVNNNSNNKNNRSGQSTPKRAAETKLPLSSPAATATIAVQHFNPVEEAVTSPLHLGIGKAQRLDHHQHQHQQRQEQHAAAAAVENGGSVPPDVAAAVAVGERRE | ||||||
Transmembrane | 315-335 | Helical | ||||
Sequence: LSVTLRLATAVLSLAAFSVIA | ||||||
Topological domain | 336-354 | Extracellular | ||||
Sequence: SARTSGWAGDYYAHHLQYR | ||||||
Transmembrane | 355-375 | Helical | ||||
Sequence: YAVAVNVIVCAYSIAQSFGEI | ||||||
Topological domain | 376-392 | Cytoplasmic | ||||
Sequence: RRLISPRFIFRSMSSYY | ||||||
Transmembrane | 393-413 | Helical | ||||
Sequence: CSLFLDQALAYLLMSASSAAA | ||||||
Topological domain | 414-431 | Extracellular | ||||
Sequence: SRNDLWVSRFGTDAFNRK | ||||||
Transmembrane | 432-452 | Helical | ||||
Sequence: ITSALWLSFIAFLMLALNALI | ||||||
Topological domain | 453-461 | Cytoplasmic | ||||
Sequence: STANLFSML |
Keywords
- Cellular component
PTM/Processing
Features
Showing features for chain.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Chain | PRO_0000391518 | 1-461 | CASP-like protein 4U1 | |||
Sequence: MASTPRTPAPVRSPPPVPTPTHPTPPPPPLETPQPPLPVSTPPPALETPPPRRVRTPPPPLETPPPPSPSSSQPGDEYHTPAPSLADGSPREEEASFPSDGREGGGAPAPPKSPQLSPMRLAAPRLLLPPPSPRTPTGQNGQEEQEGGAKAAAAGAGTGTGTAAPARQQLRLTGLARSPSSQRSLATTNSSPSPSPSPTPPSPLTPAAAPVVNNNSNNKNNRSGQSTPKRAAETKLPLSSPAATATIAVQHFNPVEEAVTSPLHLGIGKAQRLDHHQHQHQQRQEQHAAAAAVENGGSVPPDVAAAVAVGERRELSVTLRLATAVLSLAAFSVIASARTSGWAGDYYAHHLQYRYAVAVNVIVCAYSIAQSFGEIRRLISPRFIFRSMSSYYCSLFLDQALAYLLMSASSAAASRNDLWVSRFGTDAFNRKITSALWLSFIAFLMLALNALISTANLFSML |
Interaction
Structure
Family & Domains
Features
Showing features for region, compositional bias.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Region | 1-239 | Disordered | ||||
Sequence: MASTPRTPAPVRSPPPVPTPTHPTPPPPPLETPQPPLPVSTPPPALETPPPRRVRTPPPPLETPPPPSPSSSQPGDEYHTPAPSLADGSPREEEASFPSDGREGGGAPAPPKSPQLSPMRLAAPRLLLPPPSPRTPTGQNGQEEQEGGAKAAAAGAGTGTGTAAPARQQLRLTGLARSPSSQRSLATTNSSPSPSPSPTPPSPLTPAAAPVVNNNSNNKNNRSGQSTPKRAAETKLPLS | ||||||
Compositional bias | 8-72 | Pro residues | ||||
Sequence: PAPVRSPPPVPTPTHPTPPPPPLETPQPPLPVSTPPPALETPPPRRVRTPPPPLETPPPPSPSSS | ||||||
Compositional bias | 162-192 | Polar residues | ||||
Sequence: TAAPARQQLRLTGLARSPSSQRSLATTNSSP | ||||||
Compositional bias | 193-207 | Pro residues | ||||
Sequence: SPSPSPTPPSPLTPA | ||||||
Compositional bias | 208-239 | Polar residues | ||||
Sequence: AAPVVNNNSNNKNNRSGQSTPKRAAETKLPLS |
Sequence similarities
Belongs to the Casparian strip membrane proteins (CASP) family.
Keywords
- Domain
Phylogenomic databases
Family and domain databases
Sequence
- Sequence statusComplete
- Length461
- Mass (Da)48,381
- Last updated2009-09-01 v1
- Checksum62361F3D01E19F8C
Features
Showing features for compositional bias.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Compositional bias | 8-72 | Pro residues | ||||
Sequence: PAPVRSPPPVPTPTHPTPPPPPLETPQPPLPVSTPPPALETPPPRRVRTPPPPLETPPPPSPSSS | ||||||
Compositional bias | 162-192 | Polar residues | ||||
Sequence: TAAPARQQLRLTGLARSPSSQRSLATTNSSP | ||||||
Compositional bias | 193-207 | Pro residues | ||||
Sequence: SPSPSPTPPSPLTPA | ||||||
Compositional bias | 208-239 | Polar residues | ||||
Sequence: AAPVVNNNSNNKNNRSGQSTPKRAAETKLPLS |
Keywords
- Technical term
Sequence databases
Nucleotide Sequence | Protein Sequence | Molecule Type | Status | |
---|---|---|---|---|
CM000762 EMBL· GenBank· DDBJ | EES03337.1 EMBL· GenBank· DDBJ | Genomic DNA |