C5XEK4 · CSPL7_SORBI

Function

GO annotations

all annotationsall molecular functionnucleotide bindingmolecular_functionnucleic acid bindingdna bindingchromatin bindingdna-binding transcription factor activityrna bindingcytoskeletal motor activitycatalytic activitynuclease activitysignaling receptor bindingstructural molecule activitytransporter activitybindingprotein bindingtranslation factor activity, rna bindinglipid bindingkinase activitytransferase activityhydrolase activityoxygen bindingenzyme regulator activitycarbohydrate bindingsignaling receptor activitytranslation regulator activitytranscription regulator activityother molecular functionall biological processcarbohydrate metabolic processgeneration of precursor metabolites and energynucleobase-containing compound metabolic processdna metabolic processtranslationlipid metabolic processtransportresponse to stresscell cyclecell communicationsignal transductioncell-cell signalingmulticellular organism developmentcircadian rhythmbiological_processmetabolic processcatabolic processbiosynthetic processresponse to light stimulusresponse to external stimulustropismresponse to biotic stimulusresponse to abiotic stimulusresponse to endogenous stimulusembryo developmentpost-embryonic developmentfruit ripeningabscissionpollinationflower developmentcellular processprogrammed cell deathphotosynthesiscellular component organizationcell growthprotein metabolic processcellular homeostasissecondary metabolic processreproductive processcell differentiationprotein modification processgrowthepigenetic regulation of gene expressionresponse to chemicalanatomical structure developmentregulation of molecular functionother biological processall cellular componentcellular_componentextracellular regioncell wallintracellular anatomical structurenucleusnuclear envelopenucleoplasmnucleoluscytoplasmmitochondrionlysosomeendosomevacuoleperoxisomeendoplasmic reticulumgolgi apparatuscytosolribosomecytoskeletonplasma membranechloroplastplastidthylakoidmembraneexternal encapsulating structureother cellular component
Cell color indicative of number of GO terms
AspectTerm
Cellular Componentplasma membrane

Names & Taxonomy

Protein names

  • Recommended name
    CASP-like protein 4U1
  • Short names
    SbCASPL4U1

Gene names

    • Ordered locus names
      Sb03g029220

Organism names

  • Taxonomic identifier
  • Strain
    • cv. BTx623
  • Taxonomic lineage
    Eukaryota > Viridiplantae > Streptophyta > Embryophyta > Tracheophyta > Spermatophyta > Magnoliopsida > Liliopsida > Poales > Poaceae > PACMAD clade > Panicoideae > Andropogonodae > Andropogoneae > Sorghinae > Sorghum

Accessions

  • Primary accession
    C5XEK4

Proteomes

Genome annotation databases

Subcellular Location

Cell membrane
; Multi-pass membrane protein

Features

Showing features for topological domain, transmembrane.

TypeIDPosition(s)Description
Topological domain1-314Cytoplasmic
Transmembrane315-335Helical
Topological domain336-354Extracellular
Transmembrane355-375Helical
Topological domain376-392Cytoplasmic
Transmembrane393-413Helical
Topological domain414-431Extracellular
Transmembrane432-452Helical
Topological domain453-461Cytoplasmic

Keywords

PTM/Processing

Features

Showing features for chain.

TypeIDPosition(s)Description
ChainPRO_00003915181-461CASP-like protein 4U1

Interaction

Subunit

Homodimer and heterodimers.

Protein-protein interaction databases

Family & Domains

Features

Showing features for region, compositional bias.

TypeIDPosition(s)Description
Region1-239Disordered
Compositional bias8-72Pro residues
Compositional bias162-192Polar residues
Compositional bias193-207Pro residues
Compositional bias208-239Polar residues

Sequence similarities

Keywords

Phylogenomic databases

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Length
    461
  • Mass (Da)
    48,381
  • Last updated
    2009-09-01 v1
  • Checksum
    62361F3D01E19F8C
MASTPRTPAPVRSPPPVPTPTHPTPPPPPLETPQPPLPVSTPPPALETPPPRRVRTPPPPLETPPPPSPSSSQPGDEYHTPAPSLADGSPREEEASFPSDGREGGGAPAPPKSPQLSPMRLAAPRLLLPPPSPRTPTGQNGQEEQEGGAKAAAAGAGTGTGTAAPARQQLRLTGLARSPSSQRSLATTNSSPSPSPSPTPPSPLTPAAAPVVNNNSNNKNNRSGQSTPKRAAETKLPLSSPAATATIAVQHFNPVEEAVTSPLHLGIGKAQRLDHHQHQHQQRQEQHAAAAAVENGGSVPPDVAAAVAVGERRELSVTLRLATAVLSLAAFSVIASARTSGWAGDYYAHHLQYRYAVAVNVIVCAYSIAQSFGEIRRLISPRFIFRSMSSYYCSLFLDQALAYLLMSASSAAASRNDLWVSRFGTDAFNRKITSALWLSFIAFLMLALNALISTANLFSML

Features

Showing features for compositional bias.

TypeIDPosition(s)Description
Compositional bias8-72Pro residues
Compositional bias162-192Polar residues
Compositional bias193-207Pro residues
Compositional bias208-239Polar residues

Keywords

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
CM000762
EMBL· GenBank· DDBJ
EES03337.1
EMBL· GenBank· DDBJ
Genomic DNA

Genome annotation databases

Similar Proteins

Disclaimer

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