A0A1E4ND62 · A0A1E4ND62_9PROT

  • Protein
    23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
  • Gene
    rlmD
  • Status
    UniProtKB unreviewed (TrEMBL)
  • Amino acids
  • Protein existence
    Inferred from homology
  • Annotation score
    2/5

Function

function

Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.

Catalytic activity

Features

Showing features for binding site, active site.

143250100150200250300350400
TypeIDPosition(s)Description
Binding site67[4Fe-4S] cluster (UniProtKB | ChEBI)
Binding site73[4Fe-4S] cluster (UniProtKB | ChEBI)
Binding site76[4Fe-4S] cluster (UniProtKB | ChEBI)
Binding site155[4Fe-4S] cluster (UniProtKB | ChEBI)
Binding site264S-adenosyl-L-methionine (UniProtKB | ChEBI)
Binding site293S-adenosyl-L-methionine (UniProtKB | ChEBI)
Binding site298S-adenosyl-L-methionine (UniProtKB | ChEBI)
Binding site314S-adenosyl-L-methionine (UniProtKB | ChEBI)
Binding site341S-adenosyl-L-methionine (UniProtKB | ChEBI)
Binding site362S-adenosyl-L-methionine (UniProtKB | ChEBI)
Active site389
Active site389Nucleophile

GO annotations

AspectTerm
Molecular Function4 iron, 4 sulfur cluster binding
Molecular Functioniron ion binding
Molecular FunctionRNA binding
Molecular FunctionrRNA (uridine-C5-)-methyltransferase activity
Biological ProcessrRNA base methylation

Keywords

Enzyme and pathway databases

Names & Taxonomy

Protein names

  • Recommended name
    23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
  • EC number
  • Alternative names
    • 23S rRNA(m5U1939)-methyltransferase

Gene names

    • Name
      rlmD
    • ORF names
      ABT21_08760

Organism names

Accessions

  • Primary accession
    A0A1E4ND62

Proteomes

Interaction

Protein-protein interaction databases

Family & Domains

Features

Showing features for domain.

TypeIDPosition(s)Description
Domain1-54TRAM

Sequence similarities

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Length
    432
  • Mass (Da)
    47,522
  • Last updated
    2017-01-18 v1
  • Checksum
    BFE44D677839D308
MSPVVDILSLDHEGHGVARIDGKVTFVDGALAGERAEIAVYRKHAKYNSANAVGILKASAQRADPQCRYFGRCGGCSMQHLEAGAQVAAKQRVLEENLARIGKVTPELILRALHGPAWHYRHRARLSVRRVDKKGGILVGFHEKRSSFIADMDGCEVLTPDVSALIRPLRDLILGLSNSDRIPQIEIAAGERITVLVFRLLEPWTDEDAVRIRTFAERHGIQIWEQRKGPETARPFWPLDAPELGYSLPEFDLVMPFRPTEFTQVNTAINRALVSRALRLLAPRPGERIVDLFCGLGNFTLPIARSGAAVHGIEGSGELVARARENALRNRLPNATFAVDNLFEMTPEKFAALGPIDKLLIDPPRSGAIEVVKALPDTGGPHRLVYVSCDPATLARDAEVLVHVKGYRLKAAGVANMFPHTAHVESIALFER

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
MEGN01000003
EMBL· GenBank· DDBJ
ODU89765.1
EMBL· GenBank· DDBJ
Genomic DNA

Similar Proteins

Disclaimer

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